Medical Research Articles Published in January 2010

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01/01/2010
Genetic diversity in three invasive clonal aquatic species in New Zealand. (PubMedID: 20565861) BMC genetics
01/01/2010
Vietnamese chickens: a gate towards Asian genetic diversity. (PubMedID: 20565868) BMC genetics
01/01/2010
The 341C/T polymorphism in the GSTP1 gene is associated with increased risk of oesophageal cancer. (PubMedID: 20540773) BMC genetics
01/01/2010
Identification of population substructure among Jews using STR markers and dependence on reference populations included. (PubMedID: 20546593) BMC genetics
01/01/2010
An application of Random Forests to a genome-wide association dataset: methodological considerations & new findings. (PubMedID: 20546594) BMC genetics
01/01/2010
Revealing fine scale subpopulation structure in the Vietnamese H'Mong cattle breed for conservation purposes. (PubMedID: 20525403) BMC genetics
01/01/2010
Recombination facilitates neofunctionalization of duplicate genes via originalization. (PubMedID: 20534125) BMC genetics
01/01/2010
Validation of dot blot hybridization and denaturing high performance liquid chromatography as reliable methods for TP53 codon 72 genotyping in molecular epidemiologic studies. (PubMedID: 20504317) BMC genetics
01/01/2010
Analysis of vkorc1 polymorphisms in Norway rats using the roof rat as outgroup. (PubMedID: 20497562) BMC genetics
01/01/2010
Characterisation of sugar beet (Beta vulgaris L. ssp. vulgaris) varieties using microsatellite markers. (PubMedID: 20482800) BMC genetics
01/01/2010
A genome-wide association study on androstenone levels in pigs reveals a cluster of candidate genes on chromosome 6. (PubMedID: 20487517) BMC genetics
01/01/2010
Phylogenetic nomenclature and evolution of mannose-binding lectin (MBL2) haplotypes. (PubMedID: 20465856) BMC genetics
01/01/2010
How old is this mutation? - a study of three Ashkenazi Jewish founder mutations. (PubMedID: 20470408) BMC genetics
01/01/2010
A three-stage approach for genome-wide association studies with family data for quantitative traits. (PubMedID: 20470424) BMC genetics
01/01/2010
Evaluating the transferability of Hapmap SNPs to a Singapore Chinese population. (PubMedID: 20459637) BMC genetics
01/01/2010
Identification of genetic modifiers of behavioral phenotypes in serotonin transporter knockout rats. (PubMedID: 20459657) BMC genetics
01/01/2010
Influence of mutation rate on estimators of genetic differentiation--lessons from Arabidopsis thaliana. (PubMedID: 20433762) BMC genetics
01/01/2010
Phylogeography and historical demography of the Pacific Sierra mackerel (Scomberomorus sierra) in the Eastern Pacific. (PubMedID: 20438637) BMC genetics
01/01/2010
Genome-wide linkage scan for loci associated with epilepsy in Belgian shepherd dogs. (PubMedID: 20441595) BMC genetics
01/01/2010
Multiple rearrangements in cryptic species of electric knifefish, Gymnotus carapo (Gymnotidae, Gymnotiformes) revealed by chromosome painting. (PubMedID: 20420709) BMC genetics
01/01/2010
Impacts of recent cultivation on genetic diversity pattern of a medicinal plant, Scutellaria baicalensis (Lamiaceae). (PubMedID: 20429879) BMC genetics
01/01/2010
Bayesian shrinkage mapping of quantitative trait loci in variance component models. (PubMedID: 20429900) BMC genetics
01/01/2010
Genetic stock identification of Atlantic salmon (Salmo salar) populations in the southern part of the European range. (PubMedID: 20429926) BMC genetics
01/01/2010
SNP identification, verification, and utility for population genetics in a non-model genus. (PubMedID: 20433726) BMC genetics
01/01/2010
Identification of type 2 diabetes-associated combination of SNPs using support vector machine. (PubMedID: 20416077) BMC genetics
01/01/2010
Fine-scale detection of population-specific linkage disequilibrium using haplotype entropy in the human genome. (PubMedID: 20416085) BMC genetics
01/01/2010
Impact of reduced marker set estimation of genomic relationship matrices on genomic selection for feed efficiency in Angus cattle. (PubMedID: 20403185) BMC genetics
01/01/2010
High-throughput analysis of candidate imprinted genes and allele-specific gene expression in the human term placenta. (PubMedID: 20403199) BMC genetics
01/01/2010
Third chromosome candidate genes for conspecific sperm precedence between D. simulans and D. mauritiana. (PubMedID: 20388218) BMC genetics
01/01/2010
Little ROCK is a ROCK1 pseudogene expressed in human smooth muscle cells. (PubMedID: 20398283) BMC genetics
01/01/2010
Polymorphisms in the gene encoding bovine interleukin-10 receptor alpha are associated with Mycobacterium avium ssp. paratuberculosis infection status. (PubMedID: 20398313) BMC genetics
01/01/2010
A 2cM genome-wide scan of European Holstein cattle affected by classical BSE. (PubMedID: 20350325) BMC genetics
01/01/2010
An entropy test for single-locus genetic association analysis. (PubMedID: 20331859) BMC genetics
01/01/2010
Genetic evidence supports linguistic affinity of Mlabri--a hunter-gatherer group in Thailand. (PubMedID: 20302622) BMC genetics
01/01/2010
The genetic effects of the dopamine D1 receptor gene on chicken egg production and broodiness traits. (PubMedID: 20199684) BMC genetics
01/01/2010
The "silver" Japanese quail and the MITF gene: causal mutation, associated traits and homology with the "blue" chicken plumage. (PubMedID: 20184729) BMC genetics
01/01/2010
Genetic dissection of rice grain shape using a recombinant inbred line population derived from two contrasting parents and fine mapping a pleiotropic quantitative trait locus qGL7. (PubMedID: 20184774) BMC genetics
01/01/2010
A copy number variation in human NCF1 and its pseudogenes. (PubMedID: 20178640) BMC genetics
01/01/2010
Genome-wide linkage scan for factors of metabolic syndrome in a Chinese population. (PubMedID: 20181263) BMC genetics
01/01/2010
Regional differences in recombination hotspots between two chicken populations. (PubMedID: 20141624) BMC genetics
01/01/2010
Sp1 and KLF15 regulate basal transcription of the human LRP5 gene. (PubMedID: 20141633) BMC genetics
01/01/2010
A nonsense mutation in the beta-carotene oxygenase 2 (BCO2) gene is tightly associated with accumulation of carotenoids in adipose tissue in sheep (Ovis aries). (PubMedID: 20122251) BMC genetics
01/01/2010
PCA-based bootstrap confidence interval tests for gene-disease association involving multiple SNPs. (PubMedID: 20100356) BMC genetics
01/01/2010
Calcineurin and protein kinase G regulate C. elegans behavioral quiescence during locomotion in liquid. (PubMedID: 20105303) BMC genetics
01/01/2010
Mitochondrial haplogroup U is associated with a reduced risk to develop exfoliation glaucoma in the German population. (PubMedID: 20109175) BMC genetics
01/01/2010
Dispersal and population structure at different spatial scales in the subterranean rodent Ctenomys australis. (PubMedID: 20109219) BMC genetics
01/01/2010
EM algorithm for Bayesian estimation of genomic breeding values. (PubMedID: 20092655) BMC genetics
01/01/2010
Transcript profiling of candidate genes in testis of pigs exhibiting large differences in androstenone levels. (PubMedID: 20100319) BMC genetics
01/01/2010
Compilation of a panel of informative single nucleotide polymorphisms for bovine identification in the Northern Irish cattle population. (PubMedID: 20100323) BMC genetics
01/01/2010
A comparison of SNP and STR loci for delineating population structure and performing individual genetic assignment. (PubMedID: 20051144) BMC genetics
01/01/2010
The B chromosomes of the African cichlid fish Haplochromis obliquidens harbour 18S rRNA gene copies. (PubMedID: 20051104) BMC genetics
01/01/2010
Truth telling and the palliative diagnosis. (PubMedID: 20090656) International journal of palliative nursing
01/01/2010
Personalized care at the end of life: from policy to practice. (PubMedID: 20090657) International journal of palliative nursing
01/01/2010
Living with cancer-related fatigue: developing an effective management programme. (PubMedID: 20090658) International journal of palliative nursing
01/01/2010
Prevention and treatment of peripheral neuropathy after bariatric surgery. (PubMedID: 20842487) Current treatment options in neurology
01/01/2010
Metagenomic islands of hyperhalophiles: the case of Salinibacter ruber. (PubMedID: 19951421) BMC genomics
01/01/2010
Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.). (PubMedID: 21190581) BMC genomics
01/01/2010
The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence. (PubMedID: 21192786) BMC genomics
01/01/2010
SPC-P1: a pathogenicity-associated prophage of Salmonella paratyphi C. (PubMedID: 21192789) BMC genomics
01/01/2010
Transcriptome analysis of grain-filling caryopses reveals involvement of multiple regulatory pathways in chalky grain formation in rice. (PubMedID: 21192807) BMC genomics
01/01/2010
Smed454 dataset: unravelling the transcriptome of Schmidtea mediterranea. (PubMedID: 21194483) BMC genomics
01/01/2010
Whole genome sequencing of Saccharomyces cerevisiae: from genotype to phenotype for improved metabolic engineering applications. (PubMedID: 21176163) BMC genomics
01/01/2010
Accounting for multiple comparisons in a genome-wide association study (GWAS). (PubMedID: 21176216) BMC genomics
01/01/2010
Analysis of genomic differences among Clostridium botulinum type A1 strains. (PubMedID: 21182778) BMC genomics
01/01/2010
De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweet potato (Ipomoea batatas). (PubMedID: 21182800) BMC genomics
01/01/2010
Tumor and reproductive traits are linked by RNA metabolism genes in the mouse ovary: a transcriptome-phenotype association analysis. (PubMedID: 21210965) BMC genomics
01/01/2010
Decreasing the number of false positives in sequence classification. (PubMedID: 21210966) BMC genomics
01/01/2010
The role of exon shuffling in shaping protein-protein interaction networks. (PubMedID: 21210967) BMC genomics
01/01/2010
A study of high-nuclear-grade breast cancer in Thailand: subclassification and correlation with prognostic factors and immunohistochemical study. (PubMedID: 19789946) Breast cancer (Tokyo, Japan)
01/01/2010
Pitfalls in sentinel lymph node biopsy. (PubMedID: 19789950) Breast cancer (Tokyo, Japan)
01/01/2010
Breast pathology in Asia. (PubMedID: 19894086) Breast cancer (Tokyo, Japan)
01/01/2010
Development and evaluation of an international, interdisciplinary palliative care workshop in Botswana. (PubMedID: 20090659) International journal of palliative nursing
01/01/2010
A study of patients with a primary malignant brain tumour and their carers: symptoms and access to services. (PubMedID: 20090660) International journal of palliative nursing
01/01/2010
Advance care planning among Asian Americans and Native Hawaiians receiving haemodialysis. (PubMedID: 20090661) International journal of palliative nursing
01/01/2010
Moments of realization: life-limiting illness in childhood--perspectives of children, young people and families. (PubMedID: 20090662) International journal of palliative nursing
01/01/2010
A happy new year: humour and health care, part II. (PubMedID: 20090663) International journal of palliative nursing
01/01/2010
Cloning and characterization of Escherichia coli DUF299: a bifunctional ADP-dependent kinase--Pi-dependent pyrophosphorylase from bacteria. (PubMedID: 20044937) BMC biochemistry
01/01/2010
Mechanism of attenuation of leptin signaling under chronic ligand stimulation. (PubMedID: 20059770) BMC biochemistry
01/01/2010
Thioredoxins function as deglutathionylase enzymes in the yeast Saccharomyces cerevisiae. (PubMedID: 20074363) BMC biochemistry
01/01/2010
Identification of inhibitors of Plasmodium falciparum phosphoethanolamine methyltransferase using an enzyme-coupled transmethylation assay. (PubMedID: 20085640) BMC biochemistry
01/01/2010
Rapid determination of tricarboxylic acid cycle enzyme activities in biological samples. (PubMedID: 20109171) BMC biochemistry
01/01/2010
Two chitinase-like proteins abundantly accumulated in latex of mulberry show insecticidal activity. (PubMedID: 20109180) BMC biochemistry
01/01/2010
NMR characterisation of the minimal interacting regions of centrosomal proteins 4.1R and NuMA1: effect of phosphorylation. (PubMedID: 20109190) BMC biochemistry
01/01/2010
Orthophosphate binding at the dimer interface of Corynebacterium callunae starch phosphorylase: mutational analysis of its role for activity and stability of the enzyme. (PubMedID: 20113461) BMC biochemistry
01/01/2010
The Thiamine diphosphate dependent Enzyme Engineering Database: a tool for the systematic analysis of sequence and structure relations. (PubMedID: 20122171) BMC biochemistry
01/01/2010
Biochemical characterization of three putative ATPases from a new type IV secretion system of Aeromonas veronii plasmid pAC3249A. (PubMedID: 20144229) BMC biochemistry
01/01/2010
Characterization of rubber particles and rubber chain elongation in Taraxacum koksaghyz. (PubMedID: 20170509) BMC biochemistry
01/01/2010
Specific fibre composition and metabolism of the rectus abdominis muscle of bovine Charolais cattle. (PubMedID: 20205735) BMC biochemistry
01/01/2010
Identification and molecular characterization of a novel flavin-free NADPH preferred azoreductase encoded by azoB in Pigmentiphaga kullae K24. (PubMedID: 20233432) BMC biochemistry
01/01/2010
Interaction of connexin43 and protein kinase C-delta during FGF2 signaling. (PubMedID: 20338032) BMC biochemistry
01/01/2010
Interactions of unconjugated bilirubin with vesicles, cyclodextrins and micelles: new modeling and the role of high pKa values. (PubMedID: 20350304) BMC biochemistry
01/01/2010
Review: Bilirubin pKa studies: new models and theories indicate high pKa values in water, dimethylformamide and DMSO. (PubMedID: 20350305) BMC biochemistry
01/01/2010
Globin-like proteins in Caenorhabditis elegans: in vivo localization, ligand binding and structural properties. (PubMedID: 20361867) BMC biochemistry
01/01/2010
Activity of the acyl-CoA synthetase ACSL6 isoforms: role of the fatty acid Gate-domains. (PubMedID: 20429931) BMC biochemistry
01/01/2010
Thermal stability, pH dependence and inhibition of four murine kynurenine aminotransferases. (PubMedID: 20482848) BMC biochemistry
01/01/2010
Development of a sensitive non-radioactive protein kinase assay and its application for detecting DYRK activity in Xenopus laevis oocytes. (PubMedID: 20487523) BMC biochemistry
01/01/2010
Biochemical characterization of the maltokinase from Mycobacterium bovis BCG. (PubMedID: 20507595) BMC biochemistry
01/01/2010
Identification of archaeal proteins that affect the exosome function in vitro. (PubMedID: 20507607) BMC biochemistry
01/01/2010
Flavonoids activate pregnane x receptor-mediated CYP3A4 gene expression by inhibiting cyclin-dependent kinases in HepG2 liver carcinoma cells. (PubMedID: 20553580) BMC biochemistry
01/01/2010
Occurrence and sequence of Sphaeroides Heme Protein and diheme cytochrome C in purple photosynthetic bacteria in the family Rhodobacteraceae. (PubMedID: 20587053) BMC biochemistry
01/01/2010
Possibilities and pitfalls in quantifying the extent of cysteine sulfenic acid modification of specific proteins within complex biofluids. (PubMedID: 20594348) BMC biochemistry
01/01/2010
Loss of the SIN3 transcriptional corepressor results in aberrant mitochondrial function. (PubMedID: 20618965) BMC biochemistry
01/01/2010
Investigation of the chaperone function of the small heat shock protein-AgsA. (PubMedID: 20653971) BMC biochemistry
01/01/2010
Characterization of the first beta-class carbonic anhydrase from an arthropod (Drosophila melanogaster) and phylogenetic analysis of beta-class carbonic anhydrases in invertebrates. (PubMedID: 20659325) BMC biochemistry
01/01/2010
Selective control of amino acid metabolism by the GCN2 eIF2 kinase pathway in Saccharomyces cerevisiae. (PubMedID: 20684782) BMC biochemistry
01/01/2010
Na+-stimulated ATPase of alkaliphilic halotolerant cyanobacterium Aphanothece halophytica translocates Na+ into proteoliposomes via Na+ uniport mechanism. (PubMedID: 20691102) BMC biochemistry
01/01/2010
Secreted fungal sulfhydryl oxidases: sequence analysis and characterisation of a representative flavin-dependent enzyme from Aspergillus oryzae. (PubMedID: 20727152) BMC biochemistry
01/01/2010
Exploring laccase-like multicopper oxidase genes from the ascomycete Trichoderma reesei: a functional, phylogenetic and evolutionary study. (PubMedID: 20735824) BMC biochemistry
01/01/2010
Volatile profiling reveals intracellular metabolic changes in Aspergillus parasiticus: veA regulates branched chain amino acid and ethanol metabolism. (PubMedID: 20735852) BMC biochemistry
01/01/2010
Characterization of tetracycline modifying enzymes using a sensitive in vivo reporter system. (PubMedID: 20831817) BMC biochemistry
01/01/2010
Molecular characterization of tlyA gene product, Rv1694 of Mycobacterium tuberculosis: a non-conventional hemolysin and a ribosomal RNA methyl transferase. (PubMedID: 20854656) BMC biochemistry
01/01/2010
Beta-arrestin inhibits CAMKKbeta-dependent AMPK activation downstream of protease-activated-receptor-2. (PubMedID: 20858278) BMC biochemistry
01/01/2010
The effects of oligomerization on Saccharomyces cerevisiae Mcm4/6/7 function. (PubMedID: 20860810) BMC biochemistry
01/01/2010
Sex-different hepaticglycogen content and glucose output in rats. (PubMedID: 20863371) BMC biochemistry
01/01/2010
Similarity of molecular phenotype between known epilepsy gene LGI1 and disease candidate gene LGI2. (PubMedID: 20863412) BMC biochemistry
01/01/2010
Novel ß-N-acetylglucosaminidases from Vibrio harveyi 650: cloning, expression, enzymatic properties, and subsite identification. (PubMedID: 20920218) BMC biochemistry
01/01/2010
The DNA relaxation activity and covalent complex accumulation of Mycobacterium tuberculosis topoisomerase I can be assayed in Escherichia coli: application for identification of potential FRET-dye labeling sites. (PubMedID: 20920291) BMC biochemistry
01/01/2010
Regulation of Ack1 localization and activity by the amino-terminal SAM domain. (PubMedID: 20979614) BMC biochemistry
01/01/2010
Soluble perlecan domain I enhances vascular endothelial growth factor-165 activity and receptor phosphorylation in human bone marrow endothelial cells. (PubMedID: 21047416) BMC biochemistry
01/01/2010
High affinity binding of hydrophobic and autoantigenic regions of proinsulin to the 70 kDa chaperone DnaK. (PubMedID: 21059249) BMC biochemistry
01/01/2010
A sequence-dependent exonuclease activity from Tetrahymena thermophila. (PubMedID: 21080963) BMC biochemistry
01/01/2010
The reductase domain in a Type I fatty acid synthase from the apicomplexan Cryptosporidium parvum: restricted substrate preference towards very long chain fatty acyl thioesters. (PubMedID: 21092192) BMC biochemistry
01/01/2010
Identification and characterization of a bacterial glutamic peptidase. (PubMedID: 21122090) BMC biochemistry
01/01/2010
The Fer tyrosine kinase regulates interactions of Rho GDP-Dissociation Inhibitor a with the small GTPase Rac. (PubMedID: 21122136) BMC biochemistry
01/01/2010
Glyceraldehyde-3-phosphate dehydrogenase is largely unresponsive to low regulatory levels of hydrogen peroxide in Saccharomyces cerevisiae. (PubMedID: 21189144) BMC biochemistry
01/01/2010
Streptavidin-Binding Peptide (SBP)-tagged SMC2 allows single-step affinity fluorescence, blotting or purification of the condensin complex. (PubMedID: 21194474) BMC biochemistry
01/01/2010
RNA interference-mediated knockdown of CD49e (a5 integrin chain) in human thymic epithelial cells modulates the expression of multiple genes and decreases thymocyte adhesion. (PubMedID: 21210968) BMC genomics
01/01/2010
Disclosing ambiguous gene aliases by automatic literature profiling. (PubMedID: 21210969) BMC genomics
01/01/2010
Alternative splicing enriched cDNA libraries identify breast cancer-associated transcripts. (PubMedID: 21210970) BMC genomics
01/01/2010
How does heparin prevent the pH inactivation of cathepsin B? Allosteric mechanism elucidated by docking and molecular dynamics. (PubMedID: 21210971) BMC genomics
01/01/2010
Unraveling the molecular mechanisms of nitrogenase conformational protection against oxygen in diazotrophic bacteria. (PubMedID: 21210973) BMC genomics
01/01/2010
SIGLa: an adaptable LIMS for multiple laboratories. (PubMedID: 21210974) BMC genomics
01/01/2010
A machine learning approach for genome-wide prediction of morbid and druggable human genes based on systems-level data. (PubMedID: 21210975) BMC genomics
01/01/2010
Mining flexible-receptor docking experiments to select promising protein receptor snapshots. (PubMedID: 21210972) BMC genomics
01/01/2010
Temporal transcriptomic response during arsenic stress in Herminiimonas arsenicoxydans. (PubMedID: 21167028) BMC genomics
01/01/2010
Genome sequence of the pattern forming Paenibacillus vortex bacterium reveals potential for thriving in complex environments. (PubMedID: 21167037) BMC genomics
01/01/2010
Comparison of transcriptomic landscapes of bovine embryos using RNA-Seq. (PubMedID: 21167046) BMC genomics
01/01/2010
A molecular inversion probe assay for detecting alternative splicing. (PubMedID: 21167051) BMC genomics
01/01/2010
Genetic and genomic analysis of hyperlipidemia, obesity and diabetes using (C57BL/6J × TALLYHO/JngJ) F2 mice. (PubMedID: 21167066) BMC genomics
01/01/2010
Specific patterns of gene space organisation revealed in wheat by using the combination of barley and wheat genomic resources. (PubMedID: 21167071) BMC genomics
01/01/2010
miRNeye: a microRNA expression atlas of the mouse eye. (PubMedID: 21171988) BMC genomics
01/01/2010
New methods for next generation sequencing based microRNA expression profiling. (PubMedID: 21171994) BMC genomics
01/01/2010
Combining modularity, conservation, and interactions of proteins significantly increases precision and coverage of protein function prediction. (PubMedID: 21171995) BMC genomics
01/01/2010
Recent transfer of an iron-regulated gene from the plastid to the nuclear genome in an oceanic diatom adapted to chronic iron limitation. (PubMedID: 21171997) BMC genomics
01/01/2010
Genomic and transcriptomic analysis of the AP2/ERF superfamily in Vitis vinifera. (PubMedID: 21171999) BMC genomics
01/01/2010
The genetic organisation of prokaryotic two-component system signalling pathways. (PubMedID: 21172000) BMC genomics
01/01/2010
The vertebrate makorin ubiquitin ligase gene family has been shaped by large-scale duplication and retroposition from an ancestral gonad-specific, maternal-effect gene. (PubMedID: 21172006) BMC genomics
01/01/2010
Global analysis of the eukaryotic pathways and networks regulated by Salmonella typhimurium in mouse intestinal infection in vivo. (PubMedID: 21172007) BMC genomics
01/01/2010
DNA methylation in glioblastoma: impact on gene expression and clinical outcome. (PubMedID: 21156036) BMC genomics
01/01/2010
Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes. (PubMedID: 21156062) BMC genomics
01/01/2010
Gene discovery in the horned beetle Onthophagus taurus. (PubMedID: 21156066) BMC genomics
01/01/2010
Human transcriptional interactome of chromatin contribute to gene co-expression. (PubMedID: 21156067) BMC genomics
01/01/2010
Global characterization of the root transcriptome of a wild species of rice, Oryza longistaminata, by deep sequencing. (PubMedID: 21159186) BMC genomics
01/01/2010
Targeted SNP discovery in Atlantic salmon (Salmo salar) genes using a 3'UTR-primed SNP detection approach. (PubMedID: 21159188) BMC genomics
01/01/2010
Genome-wide SNPs and re-sequencing of growth habit and inflorescence genes in barley: implications for association mapping in germplasm arrays varying in size and structure. (PubMedID: 21159198) BMC genomics
01/01/2010
A response to Rome: lessons from pre- and post-publication data-sharing in the C. elegans research community. (PubMedID: 21162753) BMC genomics
01/01/2010
The venom composition of the parasitic wasp Chelonus inanitus resolved by combined expressed sequence tags analysis and proteomic approach. (PubMedID: 21138570) BMC genomics
01/01/2010
A garter snake transcriptome: pyrosequencing, de novo assembly, and sex-specific differences. (PubMedID: 21138572) BMC genomics
01/01/2010
Deep sequencing of New World screw-worm transcripts to discover genes involved in insecticide resistance. (PubMedID: 21143848) BMC genomics
01/01/2010
Transcriptome analyses based on genetic screens for Pax3 myogenic targets in the mouse embryo. (PubMedID: 21143873) BMC genomics
01/01/2010
Genomic organisation analysis of novel immunoglobulin-like transcripts in Atlantic salmon (Salmo salar) reveals a tightly clustered and multigene family. (PubMedID: 21143889) BMC genomics
01/01/2010
Comparative profiling of the transcriptional response to iron restriction in six serotypes of Actinobacillus pleuropneumoniae with different virulence potential. (PubMedID: 21143895) BMC genomics
01/01/2010
Knobbed acrosome defect is associated with a region containing the genes STK17b and HECW2 on porcine chromosome 15. (PubMedID: 21143916) BMC genomics
01/01/2010
The kinome of Phytophthora infestans reveals oomycete-specific innovations and links to other taxonomic groups. (PubMedID: 21143935) BMC genomics
01/01/2010
Massive parallel sequencing of mRNA in identification of unannotated salinity stress-inducible transcripts in rice (Oryza sativa L.). (PubMedID: 21122150) BMC genomics
01/01/2010
Analysis of transcript and protein overlap in a human osteosarcoma cell line. (PubMedID: 21126332) BMC genomics
01/01/2010
Perturbation of the yeast N-acetyltransferase NatB induces elevation of protein phosphorylation levels. (PubMedID: 21126336) BMC genomics
01/01/2010
Evaluation of diversity among common beans (Phaseolus vulgaris L.) from two centers of domestication using 'omics' technologies. (PubMedID: 21126341) BMC genomics
01/01/2010
Unprecedented loss of ammonia assimilation capability in a urease-encoding bacterial mutualist. (PubMedID: 21126349) BMC genomics
01/01/2010
Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss. (PubMedID: 21126366) BMC genomics
01/01/2010
Genome-wide binding of the orphan nuclear receptor TR4 suggests its general role in fundamental biological processes. (PubMedID: 21126370) BMC genomics
01/01/2010
Post-transcriptional regulation in the myo1? mutant of Saccharomyces cerevisiae. (PubMedID: 21126371) BMC genomics
01/01/2010
Simple sequence repeat variation in the Daphnia pulex genome. (PubMedID: 21129182) BMC genomics
01/01/2010
A new implementation of high-throughput five-dimensional clone pooling strategy for BAC library screening. (PubMedID: 21129228) BMC genomics
01/01/2010
Challenges of the next decade for the Asia Pacific region: 2010 International Conference in Bioinformatics (InCoB 2010). (PubMedID: 21143792) BMC genomics
01/01/2010
Evolutionary patterns of amino acid substitutions in 12 Drosophila genomes. (PubMedID: 21143793) BMC genomics
01/01/2010
Refining orthologue groups at the transcript level. (PubMedID: 21143794) BMC genomics
01/01/2010
RNA editing of nuclear transcripts in Arabidopsis thaliana. (PubMedID: 21143795) BMC genomics
01/01/2010
PathLocdb: a comprehensive database for the subcellular localization of metabolic pathways and its application to multiple localization analysis. (PubMedID: 21143796) BMC genomics
01/01/2010
Qualitative reasoning of dynamic gene regulatory interactions from gene expression data. (PubMedID: 21143797) BMC genomics
01/01/2010
Probing the anticancer mechanism of prospective herbal drug Withaferin A on mammals: a case study on human and bovine proteasomes. (PubMedID: 21143798) BMC genomics
01/01/2010
Construction of a genetic AND gate under a new standard for assembly of genetic parts. (PubMedID: 21143799) BMC genomics
01/01/2010
Exploring hierarchical and overlapping modular structure in the yeast protein interaction network. (PubMedID: 21143800) BMC genomics
01/01/2010
Functional data analysis for identifying nonlinear models of gene regulatory networks. (PubMedID: 21143801) BMC genomics
01/01/2010
iCOD: an integrated clinical omics database based on the systems-pathology view of disease. (PubMedID: 21143802) BMC genomics
01/01/2010
Predicting RNA-binding residues from evolutionary information and sequence conservation. (PubMedID: 21143803) BMC genomics
01/01/2010
Gerontome: a web-based database server for aging-related genes and analysis pipelines. (PubMedID: 21143804) BMC genomics
01/01/2010
SVM-based prediction of linear B-cell epitopes using Bayes Feature Extraction. (PubMedID: 21143805) BMC genomics
01/01/2010
Hierarchical kernel mixture models for the prediction of AIDS disease progression using HIV structural gp120 profiles. (PubMedID: 21143806) BMC genomics
01/01/2010
The interplay between evolution, regulation and tissue specificity in the Human Hereditary Diseasome. (PubMedID: 21143807) BMC genomics
01/01/2010
Algorithms and semantic infrastructure for mutation impact extraction and grounding. (PubMedID: 21143808) BMC genomics
01/01/2010
Inhibition of the NEMO/IKKß association complex formation, a novel mechanism associated with the NF-?B activation suppression by Withania somnifera's key metabolite withaferin A. (PubMedID: 21143809) BMC genomics
01/01/2010
TSCC: Two-Stage Combinatorial Clustering for virtual screening using protein-ligand interactions and physicochemical features. (PubMedID: 21143810) BMC genomics
01/01/2010
Advancing standards for bioinformatics activities: persistence, reproducibility, disambiguation and Minimum Information About a Bioinformatics investigation (MIABi). (PubMedID: 21143811) BMC genomics
01/01/2010
Sequence-dependent histone variant positioning signatures. (PubMedID: 21143812) BMC genomics
01/01/2010
Improving protein secondary structure prediction based on short subsequences with local structure similarity. (PubMedID: 21143813) BMC genomics
01/01/2010
dbDEMC: a database of differentially expressed miRNAs in human cancers. (PubMedID: 21143814) BMC genomics
01/01/2010
UPS 2.0: unique probe selector for probe design and oligonucleotide microarrays at the pangenomic/genomic level. (PubMedID: 21143815) BMC genomics
01/01/2010
NGSQC: cross-platform quality analysis pipeline for deep sequencing data. (PubMedID: 21143816) BMC genomics
01/01/2010
Discovery and characterization of medaka miRNA genes by next generation sequencing platform. (PubMedID: 21143817) BMC genomics
01/01/2010
In vitro homology search array comprehensively reveals highly conserved genes and their functional characteristics in non-sequenced species. (PubMedID: 21143818) BMC genomics
01/01/2010
Genome wide transcriptome profiling of a murine acute melioidosis model reveals new insights into how Burkholderia pseudomallei overcomes host innate immunity. (PubMedID: 21110886) BMC genomics
01/01/2010
Analysis of copy loss and gain variations in Holstein cattle autosomes using BeadChip SNPs. (PubMedID: 21114805) BMC genomics
01/01/2010
Apoplast proteome reveals that extracellular matrix contributes to multistress response in poplar. (PubMedID: 21114852) BMC genomics
01/01/2010
Age and sex dependent changes in liver gene expression during the life cycle of the rat. (PubMedID: 21118493) BMC genomics
01/01/2010
Exon array analysis using re-defined probe sets results in reliable identification of alternatively spliced genes in non-small cell lung cancer. (PubMedID: 21118496) BMC genomics
01/01/2010
Ensemble approach combining multiple methods improves human transcription start site prediction. (PubMedID: 21118509) BMC genomics
01/01/2010
Divergence of gene regulation through chromosomal rearrangements. (PubMedID: 21118519) BMC genomics
01/01/2010
In silico analysis highlights the frequency and diversity of type 1 lantibiotic gene clusters in genome sequenced bacteria. (PubMedID: 21118552) BMC genomics
01/01/2010
A genomic perspective on the potential of Actinobacillus succinogenes for industrial succinate production. (PubMedID: 21118570) BMC genomics
01/01/2010
De novo assembled expressed gene catalog of a fast-growing Eucalyptus tree produced by Illumina mRNA-Seq. (PubMedID: 21122097) BMC genomics
01/01/2010
Metabolic and evolutionary insights into the closely-related species Streptomyces coelicolor and Streptomyces lividans deduced from high-resolution comparative genomic hybridization. (PubMedID: 21122120) BMC genomics
01/01/2010
2K09 and thereafter : the coming era of integrative bioinformatics, systems biology and intelligent computing for functional genomics and personalized medicine research. (PubMedID: 21143775) BMC genomics
01/01/2010
Effector prediction in host-pathogen interaction based on a Markov model of a ubiquitous EPIYA motif. (PubMedID: 21143776) BMC genomics
01/01/2010
Recent advances in clustering methods for protein interaction networks. (PubMedID: 21143777) BMC genomics
01/01/2010
Robust inference of the context specific structure and temporal dynamics of gene regulatory network. (PubMedID: 21143778) BMC genomics
01/01/2010
A Bayesian approach for identifying miRNA targets by combining sequence prediction and gene expression profiling. (PubMedID: 21143779) BMC genomics
01/01/2010
Core genome components and lineage specific expansions in malaria parasites plasmodium. (PubMedID: 21143780) BMC genomics
01/01/2010
Feature amplified voting algorithm for functional analysis of protein superfamily. (PubMedID: 21143781) BMC genomics
01/01/2010
Improving CT prediction of treatment response in patients with metastatic colorectal carcinoma using statistical learning theory. (PubMedID: 21143782) BMC genomics
01/01/2010
Investigation gene and microRNA expression in glioblastoma. (PubMedID: 21143783) BMC genomics
01/01/2010
Predicting siRNA potency with random forests and support vector machines. (PubMedID: 21143784) BMC genomics
01/01/2010
Discrete diffusion models to study the effects of Mg2+ concentration on the PhoPQ signal transduction system. (PubMedID: 21143785) BMC genomics
01/01/2010
A new approach to construct pathway connected networks and its application in dose responsive gene expression profiles of rat liver regulated by 2,4DNT. (PubMedID: 21143786) BMC genomics
01/01/2010
A comparative study of cancer proteins in the human protein-protein interaction network. (PubMedID: 21143787) BMC genomics
01/01/2010
Cross-domain neurobiology data integration and exploration. (PubMedID: 21143788) BMC genomics
01/01/2010
3D-interologs: an evolution database of physical protein- protein interactions across multiple genomes. (PubMedID: 21143789) BMC genomics
01/01/2010
ICPD-a new peak detection algorithm for LC/MS. (PubMedID: 21143790) BMC genomics
01/01/2010
Adipose segmentation in small animals at 7T: a preliminary study. (PubMedID: 21143791) BMC genomics
01/01/2010
Imprinted genes show unique patterns of sequence conservation. (PubMedID: 21092170) BMC genomics
01/01/2010
Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak. (PubMedID: 21092232) BMC genomics
01/01/2010
LAB-Secretome: a genome-scale comparative analysis of the predicted extracellular and surface-associated proteins of Lactic Acid Bacteria. (PubMedID: 21092245) BMC genomics
01/01/2010
Independent evolution of the core and accessory gene sets in the genus Neisseria: insights gained from the genome of Neisseria lactamica isolate 020-06. (PubMedID: 21092259) BMC genomics
01/01/2010
Transcriptome analysis of a barley breeding program examines gene expression diversity and reveals target genes for malting quality improvement. (PubMedID: 21092286) BMC genomics
01/01/2010
Bovine proteins containing poly-glutamine repeats are often polymorphic and enriched for components of transcriptional regulatory complexes. (PubMedID: 21092319) BMC genomics
01/01/2010
In silico reversal of repeat-induced point mutation (RIP) identifies the origins of repeat families and uncovers obscured duplicated genes. (PubMedID: 21106049) BMC genomics
01/01/2010
Developing high throughput genotyped chromosome segment substitution lines based on population whole-genome re-sequencing in rice (Oryza sativa L.). (PubMedID: 21106060) BMC genomics
01/01/2010
The rapid generation of chimerical genes expanding protein diversity in zebrafish. (PubMedID: 21106061) BMC genomics
01/01/2010
Comparative analyses of vertebrate posterior HoxD clusters reveal atypical cluster architecture in the caecilian Typhlonectes natans. (PubMedID: 21106068) BMC genomics
01/01/2010
Skeletal muscle gene expression in response to resistance exercise: sex specific regulation. (PubMedID: 21106073) BMC genomics
01/01/2010
Comparative transcriptome profiling analyses during the lag phase uncover YAP1, PDR1, PDR3, RPN4, and HSF1 as key regulatory genes in genomic adaptation to the lignocellulose derived inhibitor HMF for Saccharomyces cerevisiae. (PubMedID: 21106074) BMC genomics
01/01/2010
Identification of genes for small non-coding RNAs that belong to the regulon of the two-component regulatory system CiaRH in Streptococcus. (PubMedID: 21106082) BMC genomics
01/01/2010
Evaluation of external RNA controls for the standardisation of gene expression biomarker measurements. (PubMedID: 21106083) BMC genomics
01/01/2010
Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads. (PubMedID: 21106091) BMC genomics
01/01/2010
Role of an ER stress response element in regulating the bidirectional promoter of the mouse CRELD2 - ALG12 gene pair. (PubMedID: 21106106) BMC genomics
01/01/2010
SNP detection and prediction of variability between chicken lines using genome resequencing of DNA pools. (PubMedID: 21108801) BMC genomics
01/01/2010
Structure and dynamics of the operon map of Buchnera aphidicola sp. strain APS. (PubMedID: 21108805) BMC genomics
01/01/2010
Genome sequence of adherent-invasive Escherichia coli and comparative genomic analysis with other E. coli pathotypes. (PubMedID: 21108814) BMC genomics
01/01/2010
A microbial detection array (MDA) for viral and bacterial detection. (PubMedID: 21108826) BMC genomics
01/01/2010
Global profiling of histone and DNA methylation reveals epigenetic-based regulation of gene expression during epithelial to mesenchymal transition in prostate cells. (PubMedID: 21108828) BMC genomics
01/01/2010
The non-clonality of drug resistance in Beijing-genotype isolates of Mycobacterium tuberculosis from the Western Cape of South Africa. (PubMedID: 21110864) BMC genomics
01/01/2010
A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. (PubMedID: 21110867) BMC genomics
01/01/2010
Integrated genomics of susceptibility to alkylator-induced leukemia in mice. (PubMedID: 21080971) BMC genomics
01/01/2010
An initial comparative map of copy number variations in the goat (Capra hircus) genome. (PubMedID: 21083884) BMC genomics
01/01/2010
Gene expression profile of the skin in the 'hairpoor' (HrHp) mice by microarray analysis. (PubMedID: 21083932) BMC genomics
01/01/2010
Combining target enrichment with barcode multiplexing for high throughput SNP discovery. (PubMedID: 21083938) BMC genomics
01/01/2010
Genome-wide promoter analysis of histone modifications in human monocyte-derived antigen presenting cells. (PubMedID: 21087476) BMC genomics
01/01/2010
Identification and developmental expression of the full complement of Cytochrome P450 genes in Zebrafish. (PubMedID: 21087487) BMC genomics
01/01/2010
From an electrophoretic mobility shift assay to isolated transcription factors: a fast genomic-proteomic approach. (PubMedID: 21087492) BMC genomics
01/01/2010
Bovine Genome Database: supporting community annotation and analysis of the Bos taurus genome. (PubMedID: 21092105) BMC genomics
01/01/2010
POLYAR, a new computer program for prediction of poly(A) sites in human sequences. (PubMedID: 21092114) BMC genomics
01/01/2010
A SNP based linkage map of the turkey genome reveals multiple intrachromosomal rearrangements between the turkey and chicken genomes. (PubMedID: 21092123) BMC genomics
01/01/2010
Transcriptomic and metabolomic shifts in rice roots in response to Cr (VI) stress. (PubMedID: 21092124) BMC genomics
01/01/2010
Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes. (PubMedID: 21073700) BMC genomics
01/01/2010
EcoTILLING in Capsicum species: searching for new virus resistances. (PubMedID: 21073716) BMC genomics
01/01/2010
Expression, tandem repeat copy number variation and stability of four macrosatellite arrays in the human genome. (PubMedID: 21078170) BMC genomics
01/01/2010
The human G93A-SOD1 mutation in a pre-symptomatic rat model of amyotrophic lateral sclerosis increases the vulnerability to a mild spinal cord compression. (PubMedID: 21078175) BMC genomics
01/01/2010
Insights into metazoan evolution from Alvinella pompejana cDNAs. (PubMedID: 21080938) BMC genomics
01/01/2010
Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered European eel. (PubMedID: 21080939) BMC genomics
01/01/2010
Comparative physical maps derived from BAC end sequences of tilapia (Oreochromis niloticus). (PubMedID: 21080946) BMC genomics
01/01/2010
Study of inter- and intra-individual variations in the salivary microbiota. (PubMedID: 20920195) BMC genomics
01/01/2010
Genetic linkage map of a wild genome: genomic structure, recombination and sexual dimorphism in bighorn sheep. (PubMedID: 20920197) BMC genomics
01/01/2010
The CAZyome of Phytophthora spp.: a comprehensive analysis of the gene complement coding for carbohydrate-active enzymes in species of the genus Phytophthora. (PubMedID: 20920201) BMC genomics
01/01/2010
Comparative transcriptional profiling of the limbal epithelial crypt demonstrates its putative stem cell niche characteristics. (PubMedID: 20920242) BMC genomics
01/01/2010
Computational analysis of LexA regulons in Cyanobacteria. (PubMedID: 20920248) BMC genomics
01/01/2010
Transcriptome analysis of various flower and silique development stages indicates a set of class III peroxidase genes potentially involved in pod shattering in Arabidopsis thaliana. (PubMedID: 20920253) BMC genomics
01/01/2010
Combination of measures distinguishes pre-miRNAs from other stem-loops in the genome of the newly sequenced Anopheles darlingi. (PubMedID: 20920257) BMC genomics
01/01/2010
Cell-specific occupancy of an extended repertoire of CREM and CREB binding loci in male germ cells. (PubMedID: 20920259) BMC genomics
01/01/2010
Sequence-structure-function relations of the mosquito leucine-rich repeat immune proteins. (PubMedID: 20920294) BMC genomics
01/01/2010
Scoring of senescence signalling in multiple human tumour gene expression datasets, identification of a correlation between senescence score and drug toxicity in the NCI60 panel and a pro-inflammatory signature correlating with survival advantage in peritoneal mesothelioma. (PubMedID: 20920304) BMC genomics
01/01/2010
A potential role for intragenic miRNAs on their hosts' interactome. (PubMedID: 20920310) BMC genomics
01/01/2010
Assessment of orthologous splicing isoforms in human and mouse orthologous genes. (PubMedID: 20920313) BMC genomics
01/01/2010
Conservation, duplication, and loss of the Tor signaling pathway in the fungal kingdom. (PubMedID: 20863387) BMC genomics
01/01/2010
Complete genome and comparative analysis of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5. (PubMedID: 20863402) BMC genomics
01/01/2010
SOLiD sequencing of four Vibrio vulnificus genomes enables comparative genomic analysis and identification of candidate clade-specific virulence genes. (PubMedID: 20863407) BMC genomics
01/01/2010
Differential functional genomic effects of anti-inflammatory phytocompounds on immune signaling. (PubMedID: 20868472) BMC genomics
01/01/2010
Apoptosis-associated microRNAs are modulated in mouse, rat and human neural differentiation. (PubMedID: 20868483) BMC genomics
01/01/2010
Near-saturated and complete genetic linkage map of black spruce (Picea mariana). (PubMedID: 20868486) BMC genomics
01/01/2010
Large synteny blocks revealed between Caenorhabditis elegans and Caenorhabditis briggsae genomes using OrthoCluster. (PubMedID: 20868500) BMC genomics
01/01/2010
A robust penalized method for the analysis of noisy DNA copy number data. (PubMedID: 20868505) BMC genomics
01/01/2010
Zebrafish fin immune responses during high mortality infections with viral haemorrhagic septicemia rhabdovirus. A proteomic and transcriptomic approach. (PubMedID: 20875106) BMC genomics
01/01/2010
Genome-wide conserved consensus transcription factor binding motifs are hyper-methylated. (PubMedID: 20875111) BMC genomics
01/01/2010
Burst expansion, distribution and diversification of MITEs in the silkworm genome. (PubMedID: 20875122) BMC genomics
01/01/2010
Transcriptome and expression profiling analysis revealed changes of multiple signaling pathways involved in immunity in the large yellow croaker during Aeromonas hydrophila infection. (PubMedID: 20858287) BMC genomics
01/01/2010
Prediction and classification of aminoacyl tRNA synthetases using PROSITE domains. (PubMedID: 20860794) BMC genomics
01/01/2010
The first-generation Daphnia magna linkage map. (PubMedID: 20860799) BMC genomics
01/01/2010
MicroRNA signature of the human developing pancreas. (PubMedID: 20860821) BMC genomics
01/01/2010
Genomic encyclopedia of sugar utilization pathways in the Shewanella genus. (PubMedID: 20836887) BMC genomics
01/01/2010
Gene signatures in wound tissue as evidenced by molecular profiling in the chick embryo model. (PubMedID: 20840761) BMC genomics
01/01/2010
Implementation of exon arrays: alternative splicing during T-cell proliferation as determined by whole genome analysis. (PubMedID: 20840771) BMC genomics
01/01/2010
Hif1a down-regulation is associated with transposition of great arteries in mice treated with a retinoic acid antagonist. (PubMedID: 20846364) BMC genomics
01/01/2010
Unravelling the neurophysiological basis of aggression in a fish model. (PubMedID: 20846403) BMC genomics
01/01/2010
Experimental evolution, genetic analysis and genome re-sequencing reveal the mutation conferring artemisinin resistance in an isogenic lineage of malaria parasites. (PubMedID: 20846421) BMC genomics
01/01/2010
Probing the pan-genome of Listeria monocytogenes: new insights into intraspecific niche expansion and genomic diversification. (PubMedID: 20846431) BMC genomics
01/01/2010
A BAC/BIBAC-based physical map of chickpea, Cicer arietinum L. (PubMedID: 20849583) BMC genomics
01/01/2010
Data-driven assessment of eQTL mapping methods. (PubMedID: 20849587) BMC genomics
01/01/2010
Generation and analysis of ESTs from strawberry (Fragaria xananassa) fruits and evaluation of their utility in genetic and molecular studies. (PubMedID: 20849591) BMC genomics
01/01/2010
Characterization of a novel Lactobacillus species closely related to Lactobacillus johnsonii using a combination of molecular and comparative genomics methods. (PubMedID: 20849602) BMC genomics
01/01/2010
Homoeolog-specific transcriptional bias in allopolyploid wheat. (PubMedID: 20849627) BMC genomics
01/01/2010
Markedly different genome arrangements between serotype a strains and serotypes b or c strains of Aggregatibacter actinomycetemcomitans. (PubMedID: 20825670) BMC genomics
01/01/2010
The genome of Geobacter bemidjiensis, exemplar for the subsurface clade of Geobacter species that predominate in Fe(III)-reducing subsurface environments. (PubMedID: 20828392) BMC genomics
01/01/2010
Natural selection retains overrepresented out-of-frame stop codons against frameshift peptides in prokaryotes. (PubMedID: 20828396) BMC genomics
01/01/2010
Spatio-temporal regulation of Wnt and retinoic acid signaling by tbx16/spadetail during zebrafish mesoderm differentiation. (PubMedID: 20828405) BMC genomics
01/01/2010
Identification of response-modulated genetic interactions by sensitivity-based epistatic analysis. (PubMedID: 20831804) BMC genomics
01/01/2010
Comparison of information-theoretic to statistical methods for gene-gene interactions in the presence of genetic heterogeneity. (PubMedID: 20815886) BMC genomics
01/01/2010
Molecular analysis of the diversity of vaginal microbiota associated with bacterial vaginosis. (PubMedID: 20819230) BMC genomics
01/01/2010
Expression of immune-response genes in lepidopteran host is suppressed by venom from an endoparasitoid, Pteromalus puparum. (PubMedID: 20813030) BMC genomics
01/01/2010
Fragmentation of the large subunit ribosomal RNA gene in oyster mitochondrial genomes. (PubMedID: 20813041) BMC genomics
01/01/2010
Evolution of duplicated IgH loci in Atlantic salmon, Salmo salar. (PubMedID: 20813058) BMC genomics
01/01/2010
DNA methylation patterns provide insight into epigenetic regulation in the Pacific oyster (Crassostrea gigas). (PubMedID: 20799955) BMC genomics
01/01/2010
Transfer RNA gene arrangement and codon usage in vertebrate mitochondrial genomes: a new insight into gene order conservation. (PubMedID: 20723209) BMC genomics
01/01/2010
Transcriptional profiling of root-knot nematode induced feeding sites in cowpea (Vigna unguiculata L. Walp.) using a soybean genome array. (PubMedID: 20723233) BMC genomics
01/01/2010
DNA methylation status of nuclear-encoded mitochondrial genes underlies the tissue-dependent mitochondrial functions. (PubMedID: 20723256) BMC genomics
01/01/2010
Enumerating the gene sets in breast cancer, a "direct" alternative to hierarchical clustering. (PubMedID: 20731868) BMC genomics
01/01/2010
High-throughput SNP discovery and assay development in common bean. (PubMedID: 20712881) BMC genomics
01/01/2010
Gill transcriptome response to changes in environmental calcium in the green spotted puffer fish. (PubMedID: 20716350) BMC genomics
01/01/2010
Multi-targeted priming for genome-wide gene expression assays. (PubMedID: 20716356) BMC genomics
01/01/2010
Combination of genomic approaches with functional genetic experiments reveals two modes of repression of yeast middle-phase meiosis genes. (PubMedID: 20716365) BMC genomics
01/01/2010
A complete DNA sequence map of the ovine major histocompatibility complex. (PubMedID: 20698968) BMC genomics
01/01/2010
A novel tissue-specific meta-analysis approach for gene expression predictions, initiated with a mammalian gene expression testis database. (PubMedID: 20699007) BMC genomics
01/01/2010
Highly-multiplexed SNP genotyping for genetic mapping and germplasm diversity studies in pea. (PubMedID: 20701750) BMC genomics
01/01/2010
SNP discovery by high-throughput sequencing in soybean. (PubMedID: 20701770) BMC genomics
01/01/2010
The Escherichia coli K-12 ORFeome: a resource for comparative molecular microbiology. (PubMedID: 20701780) BMC genomics
01/01/2010
Positional differences in the wound transcriptome of skin and oral mucosa. (PubMedID: 20704739) BMC genomics
01/01/2010
Deep sequencing-based transcriptome profiling analysis of bacteria-challenged Lateolabrax japonicus reveals insight into the immune-relevant genes in marine fish. (PubMedID: 20707909) BMC genomics
01/01/2010
Genetic validation of whole-transcriptome sequencing for mapping expression affected by cis-regulatory variation. (PubMedID: 20707912) BMC genomics
01/01/2010
Modulation of the maternal immune system by the pre-implantation embryo. (PubMedID: 20707927) BMC genomics
01/01/2010
Genome mapping and characterization of the Anopheles gambiae heterochromatin. (PubMedID: 20684766) BMC genomics
01/01/2010
A proteogenomic update to Yersinia: enhancing genome annotation. (PubMedID: 20687929) BMC genomics
01/01/2010
MLTreeMap--accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies. (PubMedID: 20687950) BMC genomics
01/01/2010
Transcriptome analysis of the oil-rich seed of the bioenergy crop Jatropha curcas L. (PubMedID: 20691070) BMC genomics
01/01/2010
Comparative analysis of expressed sequence tags from three castes and two life stages of the termite Reticulitermes flavipes. (PubMedID: 20691076) BMC genomics
01/01/2010
Analysis of intra-genomic GC content homogeneity within prokaryotes. (PubMedID: 20691090) BMC genomics
01/01/2010
Distributed probing of chromatin structure in vivo reveals pervasive chromatin accessibility for expressed and non-expressed genes during tissue differentiation in C. elegans. (PubMedID: 20691096) BMC genomics
01/01/2010
Microarray analysis of response of Salmonella during infection of HLA-B27- transfected human macrophage-like U937 cells. (PubMedID: 20670450) BMC genomics
01/01/2010
A new family of phosphoinositide phosphatases in microorganisms: identification and biochemical analysis. (PubMedID: 20678187) BMC genomics
01/01/2010
Using paired-end sequences to optimise parameters for alignment of sequence reads against related genomes. (PubMedID: 20678236) BMC genomics
01/01/2010
A systems approach to mapping transcriptional networks controlling surfactant homeostasis. (PubMedID: 20659319) BMC genomics
01/01/2010
Comparative venom gland transcriptome analysis of the scorpion Lychas mucronatus reveals intraspecific toxic gene diversity and new venomous components. (PubMedID: 20663230) BMC genomics
01/01/2010
Large-scale analysis of structural, sequence and thermodynamic characteristics of A-to-I RNA editing sites in human Alu repeats. (PubMedID: 20667096) BMC genomics
01/01/2010
Replication-biased genome organisation in the crenarchaeon Sulfolobus. (PubMedID: 20667100) BMC genomics
01/01/2010
Gene expression profiling in the lungs of pigs with different susceptibilities to Glässer's disease. (PubMedID: 20670446) BMC genomics
01/01/2010
Comparison of koala LPCoLN and human strains of Chlamydia pneumoniae highlights extended genetic diversity in the species. (PubMedID: 20646324) BMC genomics
01/01/2010
DNA repair and recombination in higher plants: insights from comparative genomics of Arabidopsis and rice. (PubMedID: 20646326) BMC genomics
01/01/2010
Regulation of gene expression by FSP27 in white and brown adipose tissue. (PubMedID: 20649970) BMC genomics
01/01/2010
Complete mitochondrial genomes of Taenia multiceps, T. hydatigena and T. pisiformis: additional molecular markers for a tapeworm genus of human and animal health significance. (PubMedID: 20649981) BMC genomics
01/01/2010
Brain transcriptional stability upon prion protein-encoding gene invalidation in zygotic or adult mouse. (PubMedID: 20649983) BMC genomics
01/01/2010
Mobile genetic element proliferation and gene inactivation impact over the genome structure and metabolic capabilities of Sodalis glossinidius, the secondary endosymbiont of tsetse flies. (PubMedID: 20649993) BMC genomics
01/01/2010
An insight into the sialotranscriptome of the brown dog tick, Rhipicephalus sanguineus. (PubMedID: 20650005) BMC genomics
01/01/2010
Chiropteran types I and II interferon genes inferred from genome sequencing traces by a statistical gene-family assembler. (PubMedID: 20663124) BMC genomics
01/01/2010
Transcriptional profiling of host gene expression in chicken embryo lung cells infected with laryngotracheitis virus. (PubMedID: 20663125) BMC genomics
01/01/2010
Comparative genome analysis of a large Dutch Legionella pneumophila strain collection identifies five markers highly correlated with clinical strains. (PubMedID: 20630115) BMC genomics
01/01/2010
An in silico approach for the evaluation of DNA barcodes. (PubMedID: 20637073) BMC genomics
01/01/2010
Protein phosphatase complement in rice: genome-wide identification and transcriptional analysis under abiotic stress conditions and reproductive development. (PubMedID: 20637108) BMC genomics
01/01/2010
Integration of physical and genetic maps of common bean through BAC-derived microsatellite markers. (PubMedID: 20637113) BMC genomics
01/01/2010
Comparative microarray analysis of Rhipicephalus (Boophilus) microplus expression profiles of larvae pre-attachment and feeding adult female stages on Bos indicus and Bos taurus cattle. (PubMedID: 20637126) BMC genomics
01/01/2010
Pig genome sequence--analysis and publication strategy. (PubMedID: 20642822) BMC genomics
01/01/2010
The bovine chemokine receptors and their mRNA abundance in mononuclear phagocytes. (PubMedID: 20642824) BMC genomics
01/01/2010
Sessile snails, dynamic genomes: gene rearrangements within the mitochondrial genome of a family of caenogastropod molluscs. (PubMedID: 20642828) BMC genomics
01/01/2010
Array comparative genomic hybridization analysis of Trichoderma reesei strains with enhanced cellulase production properties. (PubMedID: 20642838) BMC genomics
01/01/2010
Copy number variation at leptin receptor gene locus associated with metabolic traits and the risk of type 2 diabetes mellitus. (PubMedID: 20624279) BMC genomics
01/01/2010
Full-length cDNA sequences from Rhesus monkey placenta tissue: analysis and utility for comparative mapping. (PubMedID: 20624290) BMC genomics
01/01/2010
Mining non-model genomic libraries for microsatellites: BAC versus EST libraries and the generation of allelic richness. (PubMedID: 20624300) BMC genomics
01/01/2010
YeastWeb: a workset-centric web resource for gene family analysis in yeast. (PubMedID: 20624324) BMC genomics
01/01/2010
A versatile palindromic amphipathic repeat coding sequence horizontally distributed among diverse bacterial and eucaryotic microbes. (PubMedID: 20626840) BMC genomics
01/01/2010
Deep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata). (PubMedID: 20626894) BMC genomics
01/01/2010
Bcheck: a wrapper tool for detecting RNase P RNA genes. (PubMedID: 20626900) BMC genomics
01/01/2010
ChIP on Chip: surprising results are often artifacts. (PubMedID: 20602746) BMC genomics
01/01/2010
A new analysis tool for individual-level allele frequency for genomic studies. (PubMedID: 20602748) BMC genomics
01/01/2010
Patterns of nucleotides that flank substitutions in human orthologous genes. (PubMedID: 20602772) BMC genomics
01/01/2010
Development of admixture mapping panels for African Americans from commercial high-density SNP arrays. (PubMedID: 20602785) BMC genomics
01/01/2010
Starvation alters the liver transcriptome of the innate immune response in Atlantic salmon (Salmo salar). (PubMedID: 20602791) BMC genomics
01/01/2010
Causal reasoning identifies mechanisms of sensitivity for a novel AKT kinase inhibitor, GSK690693. (PubMedID: 20604938) BMC genomics
01/01/2010
The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences. (PubMedID: 20609256) BMC genomics
01/01/2010
Characteristics of linkage disequilibrium in North American Holsteins. (PubMedID: 20609259) BMC genomics
01/01/2010
Comparative analysis of secreted protein evolution using expressed sequence tags from four poplar leaf rusts (Melampsora spp.). (PubMedID: 20615251) BMC genomics
01/01/2010
Recovery of the mitochondrial COI barcode region in diverse Hexapoda through tRNA-based primers. (PubMedID: 20615258) BMC genomics
01/01/2010
The Giardia lamblia vsp gene repertoire: characteristics, genomic organization, and evolution. (PubMedID: 20618957) BMC genomics
01/01/2010
LTR retroelements in the genome of Daphnia pulex. (PubMedID: 20618961) BMC genomics
01/01/2010
Comprehensive survey of human brain microRNA by deep sequencing. (PubMedID: 20591156) BMC genomics
01/01/2010
Mobile element scanning (ME-Scan) by targeted high-throughput sequencing. (PubMedID: 20591181) BMC genomics
01/01/2010
Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana. (PubMedID: 20594336) BMC genomics
01/01/2010
Orthology confers intron position conservation. (PubMedID: 20598118) BMC genomics
01/01/2010
Incorporation of non-natural nucleotides into template-switching oligonucleotides reduces background and improves cDNA synthesis from very small RNA samples. (PubMedID: 20598146) BMC genomics
01/01/2010
Construction of a medicinal leech transcriptome database and its application to the identification of leech homologs of neural and innate immune genes. (PubMedID: 20579359) BMC genomics
01/01/2010
Small RNAs, DNA methylation and transposable elements in wheat. (PubMedID: 20584339) BMC genomics
01/01/2010
Whole-genome in-silico subtractive hybridization (WISH)--using massive sequencing for the identification of unique and repetitive sex-specific sequences: the example of Schistosoma mansoni. (PubMedID: 20565937) BMC genomics
01/01/2010
Expression of a retinoic acid signature in circulating CD34 cells from coronary artery disease patients. (PubMedID: 20565948) BMC genomics
01/01/2010
Array comparative hybridisation reveals a high degree of similarity between UK and European clinical isolates of hypervirulent Clostridium difficile. (PubMedID: 20565959) BMC genomics
01/01/2010
Heart transcriptome of the bank vole (Myodes glareolus): towards understanding the evolutionary variation in metabolic rate. (PubMedID: 20565972) BMC genomics
01/01/2010
Transcriptional responses in honey bee larvae infected with chalkbrood fungus. (PubMedID: 20565973) BMC genomics
01/01/2010
Morphological and molecular evidence for functional organization along the rostrocaudal axis of the adult zebrafish intestine. (PubMedID: 20565988) BMC genomics
01/01/2010
Genome comparison of the epiphytic bacteria Erwinia billingiae and E. tasmaniensis with the pear pathogen E. pyrifoliae. (PubMedID: 20565991) BMC genomics
01/01/2010
High resolution mapping of trypanosomosis resistance loci Tir2 and Tir3 using F12 advanced intercross lines with major locus Tir1 fixed for the susceptible allele. (PubMedID: 20569426) BMC genomics
01/01/2010
A draft physical map of a D-genome cotton species (Gossypium raimondii). (PubMedID: 20569427) BMC genomics
01/01/2010
Genome size evolution in pufferfish: an insight from BAC clone-based Diodon holocanthus genome sequencing. (PubMedID: 20569428) BMC genomics
01/01/2010
Global transcriptional response to carbonic anhydrase IX deficiency in the mouse stomach. (PubMedID: 20573196) BMC genomics
01/01/2010
Characterization of the equine skeletal muscle transcriptome identifies novel functional responses to exercise training. (PubMedID: 20573200) BMC genomics
01/01/2010
Alternative splicing is frequent during early embryonic development in mouse. (PubMedID: 20573213) BMC genomics
01/01/2010
De novo characterization of a whitefly transcriptome and analysis of its gene expression during development. (PubMedID: 20573269) BMC genomics
01/01/2010
Testis transcriptome analysis in male infertility: new insight on the pathogenesis of oligo-azoospermia in cases with and without AZFc microdeletion. (PubMedID: 20576090) BMC genomics
01/01/2010
An integrated web medicinal materials DNA database: MMDBD (Medicinal Materials DNA Barcode Database). (PubMedID: 20576098) BMC genomics
01/01/2010
"Does replication groups scoring reduce false positive rate in SNP interaction discovery? Response". (PubMedID: 20576100) BMC genomics
01/01/2010
Environmental transcriptome analysis reveals physiological differences between biofilm and planktonic modes of life of the iron oxidizing bacteria Leptospirillum spp. in their natural microbial community. (PubMedID: 20576116) BMC genomics
01/01/2010
Genome-wide identification and expression analysis of serine proteases and homologs in the silkworm Bombyx mori. (PubMedID: 20576138) BMC genomics
01/01/2010
Light whole genome sequence for SNP discovery across domestic cat breeds. (PubMedID: 20576142) BMC genomics
01/01/2010
A gene network switch enhances the oxidative capacity of ovine skeletal muscle during late fetal development. (PubMedID: 20546621) BMC genomics
01/01/2010
Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence. (PubMedID: 20550686) BMC genomics
01/01/2010
Response of the mosquito protein interaction network to dengue infection. (PubMedID: 20553610) BMC genomics
01/01/2010
Physical mapping of a large plant genome using global high-information-content-fingerprinting: the distal region of the wheat ancestor Aegilops tauschii chromosome 3DS. (PubMedID: 20553621) BMC genomics
01/01/2010
Detecting separate time scales in genetic expression data. (PubMedID: 20565716) BMC genomics
01/01/2010
Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays. (PubMedID: 20565764) BMC genomics
01/01/2010
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. (PubMedID: 20565788) BMC genomics
01/01/2010
Designing deep sequencing experiments: detecting structural variation and estimating transcript abundance. (PubMedID: 20565853) BMC genomics
01/01/2010
Identification of Scaffold/Matrix Attachment (S/MAR) like DNA element from the gastrointestinal protozoan parasite Giardia lamblia. (PubMedID: 20565887) BMC genomics
01/01/2010
Transcriptome analysis reveals nuclear-encoded proteins for the maintenance of temporary plastids in the dinoflagellate Dinophysis acuminata. (PubMedID: 20537123) BMC genomics
01/01/2010
The ubiquitin-conjugating enzyme HR6B is required for maintenance of X chromosome silencing in mouse spermatocytes and spermatids. (PubMedID: 20537150) BMC genomics
01/01/2010
From array-based hybridization of Helicobacter pylori isolates to the complete genome sequence of an isolate associated with MALT lymphoma. (PubMedID: 20537153) BMC genomics
01/01/2010
Comparative genomics of the family Vibrionaceae reveals the wide distribution of genes encoding virulence-associated proteins. (PubMedID: 20537180) BMC genomics
01/01/2010
Transcription profiling provides insights into gene pathways involved in horn and scurs development in cattle. (PubMedID: 20537189) BMC genomics
01/01/2010
Comparative mitogenomics of Braconidae (Insecta: Hymenoptera) and the phylogenetic utility of mitochondrial genomes with special reference to Holometabolous insects. (PubMedID: 20537196) BMC genomics
01/01/2010
Muscle transcriptomic profiles in pigs with divergent phenotypes for fatness traits. (PubMedID: 20540717) BMC genomics
01/01/2010
Reassociation kinetics-based approach for partial genome sequencing of the cattle tick, Rhipicephalus (Boophilus) microplus. (PubMedID: 20540747) BMC genomics
01/01/2010
Drawing the line between commensal and pathogenic Gardnerella vaginalis through genome analysis and virulence studies. (PubMedID: 20540756) BMC genomics
01/01/2010
Whole genome analysis of a livestock-associated methicillin-resistant Staphylococcus aureus ST398 isolate from a case of human endocarditis. (PubMedID: 20546576) BMC genomics
01/01/2010
Genomic analysis of carboxyl/cholinesterase genes in the silkworm Bombyx mori. (PubMedID: 20546589) BMC genomics
01/01/2010
Prednisolone-induced differential gene expression in mouse liver carrying wild type or a dimerization-defective glucocorticoid receptor. (PubMedID: 20525385) BMC genomics
01/01/2010
Transcriptomic responses in mouse brain exposed to chronic excess of the neurotransmitter glutamate. (PubMedID: 20529287) BMC genomics
01/01/2010
Genotype and expression analysis of two inbred mouse strains and two derived congenic strains suggest that most gene expression is trans regulated and sensitive to genetic background. (PubMedID: 20529291) BMC genomics
01/01/2010
Insights into shell deposition in the Antarctic bivalve Laternula elliptica: gene discovery in the mantle transcriptome using 454 pyrosequencing. (PubMedID: 20529341) BMC genomics
01/01/2010
The expression of genes coding for distinct types of glycine-rich proteins varies according to the biology of three metastriate ticks, Rhipicephalus (Boophilus) microplus, Rhipicephalus sanguineus and Amblyomma cajennense. (PubMedID: 20529354) BMC genomics
01/01/2010
Systematic investigation of global coordination among mRNA and protein in cellular society. (PubMedID: 20529381) BMC genomics
01/01/2010
Transcriptional regulation of gene expression clusters in motor neurons following spinal cord injury. (PubMedID: 20534130) BMC genomics
01/01/2010
Transcriptome analysis in non-model species: a new method for the analysis of heterologous hybridization on microarrays. (PubMedID: 20509979) BMC genomics
01/01/2010
Transcriptomic analysis of dystrophin RNAi knockdown reveals a central role for dystrophin in muscle differentiation and contractile apparatus organization. (PubMedID: 20515474) BMC genomics
01/01/2010
Analyses of genome architecture and gene expression reveal novel candidate virulence factors in the secretome of Phytophthora infestans. (PubMedID: 21080964) BMC genomics
01/01/2010
Identification and analysis of the germin-like gene family in soybean. (PubMedID: 21059215) BMC genomics
01/01/2010
Genomic tools development for Aquilegia: construction of a BAC-based physical map. (PubMedID: 21059242) BMC genomics
01/01/2010
Analyses and interpretation of whole-genome gene expression from formalin-fixed paraffin-embedded tissue: an illustration with breast cancer tissues. (PubMedID: 21059268) BMC genomics
01/01/2010
Use of a bovine genome array to identify new biological pathways for beef marbling in Hanwoo (Korean Cattle). (PubMedID: 21062493) BMC genomics
01/01/2010
Transcriptomic analysis of the temporal host response to skin infestation with the ectoparasitic mite Psoroptes ovis. (PubMedID: 21067579) BMC genomics
01/01/2010
Identification of small RNAs in Francisella tularensis. (PubMedID: 21067590) BMC genomics
01/01/2010
Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset. (PubMedID: 21067613) BMC genomics
01/01/2010
Comparative genomics of prevaccination and modern Bordetella pertussis strains. (PubMedID: 21070624) BMC genomics
01/01/2010
Global genome analysis of the shikimic acid pathway reveals greater gene loss in host-associated than in free-living bacteria. (PubMedID: 21070645) BMC genomics
01/01/2010
Differential gene expression in nearly isogenic lines with QTL for partial resistance to Puccinia hordei in barley. (PubMedID: 21070652) BMC genomics
01/01/2010
Female-biased expression of long non-coding RNAs in domains that escape X-inactivation in mouse. (PubMedID: 21047393) BMC genomics
01/01/2010
A comparative genome-wide study of ncRNAs in trypanosomatids. (PubMedID: 21050447) BMC genomics
01/01/2010
Integrative mapping analysis of chicken microchromosome 16 organization. (PubMedID: 21050458) BMC genomics
01/01/2010
Genes optimized by evolution for accurate and fast translation encode in Archaea and Bacteria a broad and characteristic spectrum of protein functions. (PubMedID: 21050470) BMC genomics
01/01/2010
Genome-wide BAC-end sequencing of Cucumis melo using two BAC libraries. (PubMedID: 21054843) BMC genomics
01/01/2010
Digital gene expression tag profiling of bat digits provides robust candidates contributing to wing formation. (PubMedID: 21054883) BMC genomics
01/01/2010
Classification of genomic islands using decision trees and their ensemble algorithms. (PubMedID: 21047376) BMC genomics
01/01/2010
Identifying protein complexes from interaction networks based on clique percolation and distance restriction. (PubMedID: 21047377) BMC genomics
01/01/2010
Predicting gene function using few positive examples and unlabeled ones. (PubMedID: 21047378) BMC genomics
01/01/2010
Discovery of pathway biomarkers from coupled proteomics and systems biology methods. (PubMedID: 21047379) BMC genomics
01/01/2010
An improved approach for the segmentation of starch granules in microscopic images. (PubMedID: 21047380) BMC genomics
01/01/2010
Analysis of long branch extraction and long branch shortening. (PubMedID: 21047381) BMC genomics
01/01/2010
Microarray data integration for genome-wide analysis of human tissue-selective gene expression. (PubMedID: 21047382) BMC genomics
01/01/2010
Global protein interactome exploration through mining genome-scale data in Arabidopsis thaliana. (PubMedID: 21047383) BMC genomics
01/01/2010
Density based pruning for identification of differentially expressed genes from microarray data. (PubMedID: 21047384) BMC genomics
01/01/2010
Generation, analysis and functional annotation of expressed sequence tags from the sheepshead minnow (Cyprinodon variegatus). (PubMedID: 21047385) BMC genomics
01/01/2010
Sequence feature-based prediction of protein stability changes upon amino acid substitutions. (PubMedID: 21047386) BMC genomics
01/01/2010
Inferring gene regulatory networks from asynchronous microarray data with AIRnet. (PubMedID: 21047387) BMC genomics
01/01/2010
Nucleosome structure incorporated histone acetylation site prediction in Arabidopsis thaliana. (PubMedID: 21047388) BMC genomics
01/01/2010
Identifying functional relationships within sets of co-expressed genes by combining upstream regulatory motif analysis and gene expression information. (PubMedID: 21047389) BMC genomics
01/01/2010
Speckle reducing bilateral filter for cattle follicle segmentation. (PubMedID: 21047390) BMC genomics
01/01/2010
Conserved and variable correlated mutations in the plant MADS protein network. (PubMedID: 20979667) BMC genomics
01/01/2010
Consistent levels of A-to-I RNA editing across individuals in coding sequences and non-conserved Alu repeats. (PubMedID: 21029430) BMC genomics
01/01/2010
Genomic analysis of microRNA time-course expression in liver of mice treated with genotoxic carcinogen N-ethyl-N-nitrosourea. (PubMedID: 21029445) BMC genomics
01/01/2010
Structural modelling and comparative analysis of homologous, analogous and specific proteins from Trypanosoma cruzi versus Homo sapiens: putative drug targets for chagas' disease treatment. (PubMedID: 21034488) BMC genomics
01/01/2010
The genomic underpinnings of apoptosis in the silkworm, Bombyx mori. (PubMedID: 21040523) BMC genomics
01/01/2010
Stimulatory effect of Echinacea purpurea extract on the trafficking activity of mouse dendritic cells: revealed by genomic and proteomic analyses. (PubMedID: 21040561) BMC genomics
01/01/2010
Transcriptome and proteome analysis of Pinctada margaritifera calcifying mantle and shell: focus on biomineralization. (PubMedID: 21040589) BMC genomics
01/01/2010
The complete mitochondrial genome of the citrus red mite Panonychus citri (Acari: Tetranychidae): high genome rearrangement and extremely truncated tRNAs. (PubMedID: 20969792) BMC genomics
01/01/2010
Genome-wide survey and analysis of microsatellites in nematodes, with a focus on the plant-parasitic species Meloidogyne incognita. (PubMedID: 20973953) BMC genomics
01/01/2010
Genomic analysis and relatedness of P2-like phages of the Burkholderia cepacia complex. (PubMedID: 20973964) BMC genomics
01/01/2010
Annotation and comparative analysis of the glycoside hydrolase genes in Brachypodium distachyon. (PubMedID: 20973991) BMC genomics
01/01/2010
Transcriptional activity of transposable elements in maize. (PubMedID: 20973992) BMC genomics
01/01/2010
Genomic survey of the ectoparasitic mite Varroa destructor, a major pest of the honey bee Apis mellifera. (PubMedID: 20973996) BMC genomics
01/01/2010
A novel multifunctional oligonucleotide microarray for Toxoplasma gondii. (PubMedID: 20974003) BMC genomics
01/01/2010
A sweet potato gene index established by de novo assembly of pyrosequencing and Sanger sequences and mining for gene-based microsatellite markers. (PubMedID: 20977749) BMC genomics
01/01/2010
A transcriptomic analysis of gene expression in the venom gland of the snake Bothrops alternatus (urutu). (PubMedID: 20977763) BMC genomics
01/01/2010
Gene discovery from Jatropha curcas by sequencing of ESTs from normalized and full-length enriched cDNA library from developing seeds. (PubMedID: 20979643) BMC genomics
01/01/2010
Deciphering the intracellular metabolism of Listeria monocytogenes by mutant screening and modelling. (PubMedID: 20955543) BMC genomics
01/01/2010
Heading down the wrong pathway: on the influence of correlation within gene sets. (PubMedID: 20955544) BMC genomics
01/01/2010
An Sp185/333 gene cluster from the purple sea urchin and putative microsatellite-mediated gene diversification. (PubMedID: 20955585) BMC genomics
01/01/2010
Genome wide analysis of DNA copy number neutral loss of heterozygosity (CNNLOH) and its relation to gene expression in esophageal squamous cell carcinoma. (PubMedID: 20955586) BMC genomics
01/01/2010
Quantitative trait loci mapping reveals candidate pathways regulating cell cycle duration in Plasmodium falciparum. (PubMedID: 20955606) BMC genomics
01/01/2010
Genome-wide inference of regulatory networks in Streptomyces coelicolor. (PubMedID: 20955611) BMC genomics
01/01/2010
Transcriptome analysis of parallel-evolved Escherichia coli strains under ethanol stress. (PubMedID: 20955615) BMC genomics
01/01/2010
ProFITS of maize: a database of protein families involved in the transduction of signalling in the maize genome. (PubMedID: 20955618) BMC genomics
01/01/2010
The spatial distribution of cis regulatory elements in yeast promoters and its implications for transcriptional regulation. (PubMedID: 20958978) BMC genomics
01/01/2010
Differential gene expression during the moult cycle of Antarctic krill (Euphausia superba). (PubMedID: 20958982) BMC genomics
01/01/2010
Toxicogenomic analysis of exposure to TCDD, PCB126 and PCB153: identification of genomic biomarkers of exposure to AhR ligands. (PubMedID: 20959002) BMC genomics
01/01/2010
An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data. (PubMedID: 20959013) BMC genomics
01/01/2010
Genetic diversity and striatal gene networks: focus on the heterogeneous stock-collaborative cross (HS-CC) mouse. (PubMedID: 20959017) BMC genomics
01/01/2010
Use of consensus sequences for the design of high density resequencing microarrays: the influenza virus paradigm. (PubMedID: 20961419) BMC genomics
01/01/2010
Gene expression in Pseudomonas aeruginosa swarming motility. (PubMedID: 20961425) BMC genomics
01/01/2010
Gene duplications in prokaryotes can be associated with environmental adaptation. (PubMedID: 20961426) BMC genomics
01/01/2010
Is human blood a good surrogate for brain tissue in transcriptional studies? (PubMedID: 20961428) BMC genomics
01/01/2010
A widespread peroxiredoxin-like domain present in tumor suppression- and progression-implicated proteins. (PubMedID: 20964819) BMC genomics
01/01/2010
High-throughput microarray technology in diagnostics of enterobacteria based on genome-wide probe selection and regression analysis. (PubMedID: 20964857) BMC genomics
01/01/2010
Development and validation of a flax (Linum usitatissimum L.) gene expression oligo microarray. (PubMedID: 20964859) BMC genomics
01/01/2010
Copy number variation in the porcine genome inferred from a 60 k SNP BeadChip. (PubMedID: 20969757) BMC genomics
01/01/2010
Construction of an integrated genetic linkage map for the A genome of Brassica napus using SSR markers derived from sequenced BACs in B. rapa. (PubMedID: 20969760) BMC genomics
01/01/2010
A computational-based update on microRNAs and their targets in barley (Hordeum vulgare L.). (PubMedID: 20969764) BMC genomics
01/01/2010
Differential alterations in gene expression profiles contribute to time-dependent effects of nandrolone to prevent denervation atrophy. (PubMedID: 20969782) BMC genomics
01/01/2010
SHV Lactamase Engineering Database: a reconciliation tool for SHV ß-lactamases in public databases. (PubMedID: 20942904) BMC genomics
01/01/2010
Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. (PubMedID: 20942956) BMC genomics
01/01/2010
Expression proteomics of UPF1 knockdown in HeLa cells reveals autoregulation of hnRNP A2/B1 mediated by alternative splicing resulting in nonsense-mediated mRNA decay. (PubMedID: 20946641) BMC genomics
01/01/2010
Transcriptomic and functional analysis of the Anopheles gambiae salivary gland in relation to blood feeding. (PubMedID: 20946652) BMC genomics
01/01/2010
Systematic identification of conserved motif modules in the human genome. (PubMedID: 20946653) BMC genomics
01/01/2010
Units of plasticity in bacterial genomes: new insight from the comparative genomics of two bacteria interacting with invertebrates, Photorhabdus and Xenorhabdus. (PubMedID: 20950463) BMC genomics
01/01/2010
Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.). (PubMedID: 20950470) BMC genomics
01/01/2010
A fast and cost-effective approach to develop and map EST-SSR markers: oak as a case study. (PubMedID: 20950475) BMC genomics
01/01/2010
Comparing de novo assemblers for 454 transcriptome data. (PubMedID: 20950480) BMC genomics
01/01/2010
Identification of expression QTL (eQTL) of genes expressed in porcine M. longissimus dorsi and associated with meat quality traits. (PubMedID: 20950486) BMC genomics
01/01/2010
Unique genome-wide transcriptome profiles of chicken macrophages exposed to Salmonella-derived endotoxin. (PubMedID: 20929591) BMC genomics
01/01/2010
Gene expression profiling in the stress control brain region hypothalamic paraventricular nucleus reveals a novel gene network including amyloid beta precursor protein. (PubMedID: 20932279) BMC genomics
01/01/2010
Gene expression in a paleopolyploid: a transcriptome resource for the ciliate Paramecium tetraurelia. (PubMedID: 20932287) BMC genomics
01/01/2010
Dynamic transcriptomic profiles of zebrafish gills in response to zinc depletion. (PubMedID: 20932299) BMC genomics
01/01/2010
Genome-wide regulation of innate immunity by juvenile hormone and 20-hydroxyecdysone in the Bombyx fat body. (PubMedID: 20932328) BMC genomics
01/01/2010
Genome-wide analysis of the effect of histone modifications on the coexpression of neighboring genes in Saccharomyces cerevisiae. (PubMedID: 20932330) BMC genomics
01/01/2010
Construction of an almond linkage map in an Australian population Nonpareil x Lauranne. (PubMedID: 20932335) BMC genomics
01/01/2010
A genome-wide SNP-association study confirms a sequence variant (g.66493737C>T) in the equine myostatin (MSTN) gene as the most powerful predictor of optimum racing distance for Thoroughbred racehorses. (PubMedID: 20932346) BMC genomics
01/01/2010
Dynamic transcriptomic profiles of zebrafish gills in response to zinc supplementation. (PubMedID: 20937081) BMC genomics
01/01/2010
A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus). (PubMedID: 20937088) BMC genomics
01/01/2010
Clostridium sticklandii, a specialist in amino acid degradation:revisiting its metabolism through its genome sequence. (PubMedID: 20937090) BMC genomics
01/01/2010
Response of swine spleen to Streptococcus suis infection revealed by transcription analysis. (PubMedID: 20937098) BMC genomics
01/01/2010
Genome-wide expression patterns in physiological cardiac hypertrophy. (PubMedID: 20937113) BMC genomics
01/01/2010
Mating alters gene expression patterns in Drosophila melanogaster male heads. (PubMedID: 20937114) BMC genomics
01/01/2010
High-throughput sequencing and analysis of the gill tissue transcriptome from the deep-sea hydrothermal vent mussel Bathymodiolus azoricus. (PubMedID: 20937131) BMC genomics
01/01/2010
Representativeness of microsatellite distributions in genomes, as revealed by 454 GS-FLX titanium pyrosequencing. (PubMedID: 20939885) BMC genomics
01/01/2010
Primary transcriptomes of Mycobacterium avium subsp. paratuberculosis reveal proprietary pathways in tissue and macrophages. (PubMedID: 20939887) BMC genomics
01/01/2010
Expansion and subfunctionalisation of flavonoid 3',5'-hydroxylases in the grapevine lineage. (PubMedID: 20939908) BMC genomics
01/01/2010
A three-way comparative genomic analysis of Mannheimia haemolytica isolates. (PubMedID: 20920355) BMC genomics
01/01/2010
Gene discovery for the bark beetle-vectored fungal tree pathogen Grosmannia clavigera. (PubMedID: 20920358) BMC genomics
01/01/2010
Identification of the Rage-dependent gene regulatory network in a mouse model of skin inflammation. (PubMedID: 20923549) BMC genomics
01/01/2010
AnnoTrack--a tracking system for genome annotation. (PubMedID: 20923551) BMC genomics
01/01/2010
Genomic organization and evolution of the Atlantic salmon hemoglobin repertoire. (PubMedID: 20923558) BMC genomics
01/01/2010
The cost of reducing starting RNA quantity for Illumina BeadArrays: a bead-level dilution experiment. (PubMedID: 20925945) BMC genomics
01/01/2010
Dynamic, mating-induced gene expression changes in female head and brain tissues of Drosophila melanogaster. (PubMedID: 20925960) BMC genomics
01/01/2010
An optimized protocol for microarray validation by quantitative PCR using amplified amino allyl labeled RNA. (PubMedID: 20929564) BMC genomics
01/01/2010
Genome analysis and comparative genomics of a Giardia intestinalis assemblage E isolate. (PubMedID: 20929575) BMC genomics
01/01/2010
Aberrant host immune response induced by highly virulent PRRSV identified by digital gene expression tag profiling. (PubMedID: 20929578) BMC genomics
01/01/2010
Identification and characterization of microRNAs in Clonorchis sinensis of human health significance. (PubMedID: 20920166) BMC genomics
01/01/2010
An improved, high-quality draft genome sequence of the Germination-Arrest Factor-producing Pseudomonas fluorescens WH6. (PubMedID: 20920191) BMC genomics
01/01/2010
Age-related molecular genetic changes of murine bone marrow mesenchymal stem cells. (PubMedID: 20374652) BMC genomics
01/01/2010
Whole transcriptome analysis of the hippocampus: toward a molecular portrait of epileptogenesis. (PubMedID: 20377889) BMC genomics
01/01/2010
Evolutionary genomics revealed interkingdom distribution of Tcn1-like chromodomain-containing Gypsy LTR retrotransposons among fungi and plants. (PubMedID: 20377908) BMC genomics
01/01/2010
Identification of copy number variations and common deletion polymorphisms in cattle. (PubMedID: 20377913) BMC genomics
01/01/2010
A scenario of mitochondrial genome evolution in maize based on rearrangement events. (PubMedID: 20380689) BMC genomics
01/01/2010
Evolutionary conservation of essential and highly expressed genes in Pseudomonas aeruginosa. (PubMedID: 20380691) BMC genomics
01/01/2010
A comparison of SNPs and microsatellites as linkage mapping markers: lessons from the zebra finch (Taeniopygia guttata). (PubMedID: 20359323) BMC genomics
01/01/2010
Digital gene expression analysis of the zebra finch genome. (PubMedID: 20359325) BMC genomics
01/01/2010
Comparative genomic analysis of the zebra finch degradome provides new insights into evolution of proteases in birds and mammals. (PubMedID: 20359326) BMC genomics
01/01/2010
LEAPdb: a database for the late embryogenesis abundant proteins. (PubMedID: 20359361) BMC genomics
01/01/2010
Drug target prediction and prioritization: using orthology to predict essentiality in parasite genomes. (PubMedID: 20361874) BMC genomics
01/01/2010
Discovery of global genomic re-organization based on comparison of two newly sequenced rice mitochondrial genomes with cytoplasmic male sterility-related genes. (PubMedID: 20346185) BMC genomics
01/01/2010
Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. (PubMedID: 20350329) BMC genomics
01/01/2010
Testes and brain gene expression in precocious male and adult maturing Atlantic salmon (Salmo salar). (PubMedID: 20350334) BMC genomics
01/01/2010
Mercury-induced hepatotoxicity in zebrafish: in vivo mechanistic insights from transcriptome analysis, phenotype anchoring and targeted gene expression validation. (PubMedID: 20353558) BMC genomics
01/01/2010
An insight into the sialome of Glossina morsitans morsitans. (PubMedID: 20353571) BMC genomics
01/01/2010
Evidence for a lineage of virulent bacteriophages that target Campylobacter. (PubMedID: 20353581) BMC genomics
01/01/2010
Functional genomics of mountain pine beetle (Dendroctonus ponderosae) midguts and fat bodies. (PubMedID: 20353591) BMC genomics
01/01/2010
Transcriptome response to pollutants and insecticides in the dengue vector Aedes aegypti using next-generation sequencing technology. (PubMedID: 20356352) BMC genomics
01/01/2010
Comparative genomics of metabolic networks of free-living and parasitic eukaryotes. (PubMedID: 20356377) BMC genomics
01/01/2010
Transcriptional profiling of an Fd-GOGAT1/GLU1 mutant in Arabidopsis thaliana reveals a multiple stress response and extensive reprogramming of the transcriptome. (PubMedID: 20307264) BMC genomics
01/01/2010
Development of a SNP resource and a genetic linkage map for Atlantic cod (Gadus morhua). (PubMedID: 20307277) BMC genomics
01/01/2010
Orchestrated transcription of biological processes in the marine picoeukaryote Ostreococcus exposed to light/dark cycles. (PubMedID: 20307298) BMC genomics
01/01/2010
Use of microarray technology to assess the time course of liver stress response after confinement exposure in gilthead sea bream (Sparus aurata L.). (PubMedID: 20307314) BMC genomics
01/01/2010
Evidence of perturbations of cell cycle and DNA repair pathways as a consequence of human and murine NF1-haploinsufficiency. (PubMedID: 20307317) BMC genomics
01/01/2010
Molecular and evolutionary characteristics of the fraction of human alpha satellite DNA associated with CENP-A at the centromeres of chromosomes 1, 5, 19, and 21. (PubMedID: 20331851) BMC genomics
01/01/2010
Reciprocal regulation of metabolic and signaling pathways. (PubMedID: 20334672) BMC genomics
01/01/2010
Genome-wide comparative analysis of metacaspases in unicellular and filamentous cyanobacteria. (PubMedID: 20334693) BMC genomics
01/01/2010
Transcriptome analysis reveals a major impact of JAK protein tyrosine kinase 2 (Tyk2) on the expression of interferon-responsive and metabolic genes. (PubMedID: 20338026) BMC genomics
01/01/2010
Genome-wide characterisation of the Gcn5 histone acetyltransferase in budding yeast during stress adaptation reveals evolutionarily conserved and diverged roles. (PubMedID: 20338033) BMC genomics
01/01/2010
Genomic analysis of expressed sequence tags in American black bear Ursus americanus. (PubMedID: 20338065) BMC genomics
01/01/2010
Metabolic modeling and analysis of the metabolic switch in Streptomyces coelicolor. (PubMedID: 20338070) BMC genomics
01/01/2010
Downregulation of genes with a function in axon outgrowth and synapse formation in motor neurones of the VEGFdelta/delta mouse model of amyotrophic lateral sclerosis. (PubMedID: 20346106) BMC genomics
01/01/2010
Physical mapping in highly heterozygous genomes: a physical contig map of the Pinot Noir grapevine cultivar. (PubMedID: 20346114) BMC genomics
01/01/2010
Detection of novel 3' untranslated region extensions with 3' expression microarrays. (PubMedID: 20346121) BMC genomics
01/01/2010
The ancient mammalian KRAB zinc finger gene cluster on human chromosome 8q24.3 illustrates principles of C2H2 zinc finger evolution associated with unique expression profiles in human tissues. (PubMedID: 20346131) BMC genomics
01/01/2010
The response to unfolded protein is involved in osmotolerance of Pichia pastoris. (PubMedID: 20346137) BMC genomics
01/01/2010
Systematic discovery of regulatory motifs in Fusarium graminearum by comparing four Fusarium genomes. (PubMedID: 20346147) BMC genomics
01/01/2010
Legionella pneumophila pangenome reveals strain-specific virulence factors. (PubMedID: 20236513) BMC genomics
01/01/2010
Chromosomal evolution in the plant family Solanaceae. (PubMedID: 20236516) BMC genomics
01/01/2010
Complementary transcriptomic, lipidomic, and targeted functional genetic analyses in cultured Drosophila cells highlight the role of glycerophospholipid metabolism in Flock House virus RNA replication. (PubMedID: 20236518) BMC genomics
01/01/2010
Synteny mapping between common bean and soybean reveals extensive blocks of shared loci. (PubMedID: 20298570) BMC genomics
01/01/2010
wDBTF: an integrated database resource for studying wheat transcription factor families. (PubMedID: 20298594) BMC genomics
01/01/2010
Differential expression of genes in salivary glands of male Rhipicephalus (Boophilus)microplus in response to infection with Anaplasma marginale. (PubMedID: 20298599) BMC genomics
01/01/2010
Antimicrobial peptide-like genes in Nasonia vitripennis: a genomic perspective. (PubMedID: 20302637) BMC genomics
01/01/2010
Single feature polymorphism (SFP)-based selective sweep identification and association mapping of growth-related metabolic traits in Arabidopsis thaliana. (PubMedID: 20302660) BMC genomics
01/01/2010
Library of molecular associations: curating the complex molecular basis of liver diseases. (PubMedID: 20302666) BMC genomics
01/01/2010
TC-motifs at the TATA-box expected position in plant genes: a novel class of motifs involved in the transcription regulation. (PubMedID: 20222994) BMC genomics
01/01/2010
Large-scale transcriptome data reveals transcriptional activity of fission yeast LTR retrotransposons. (PubMedID: 20226011) BMC genomics
01/01/2010
Transcriptome survey of the anhydrobiotic tardigrade Milnesium tardigradum in comparison with Hypsibius dujardini and Richtersius coronifer. (PubMedID: 20226016) BMC genomics
01/01/2010
A sequence motif enriched in regions bound by the Drosophila dosage compensation complex. (PubMedID: 20226017) BMC genomics
01/01/2010
The RST and PARP-like domain containing SRO protein family: analysis of protein structure, function and conservation in land plants. (PubMedID: 20226034) BMC genomics
01/01/2010
Whole genome evaluation of horizontal transfers in the pathogenic fungus Aspergillus fumigatus. (PubMedID: 20226043) BMC genomics
01/01/2010
Myosin individualized: single nucleotide polymorphisms in energy transduction. (PubMedID: 20226094) BMC genomics
01/01/2010
Expression profile of cuticular genes of silkworm, Bombyx mori. (PubMedID: 20226095) BMC genomics
01/01/2010
QTL mapping for Mediterranean corn borer resistance in European flint germplasm using recombinant inbred lines. (PubMedID: 20230603) BMC genomics
01/01/2010
Systematic analysis of off-target effects in an RNAi screen reveals microRNAs affecting sensitivity to TRAIL-induced apoptosis. (PubMedID: 20230625) BMC genomics
01/01/2010
The embryonic genes Dkk3, Hoxd8, Hoxd9 and Tbx1 identify muscle types in a diet-independent and fiber-type unrelated way. (PubMedID: 20230627) BMC genomics
01/01/2010
Phylogenetic analysis of fungal ABC transporters. (PubMedID: 20233411) BMC genomics
01/01/2010
Co-expression of neighbouring genes in Arabidopsis: separating chromatin effects from direct interactions. (PubMedID: 20233415) BMC genomics
01/01/2010
Characterization of the ovine ribosomal protein SA gene and its pseudogenes. (PubMedID: 20233419) BMC genomics
01/01/2010
Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery. (PubMedID: 20233449) BMC genomics
01/01/2010
Discovery and application of insertion-deletion (INDEL) polymorphisms for QTL mapping of early life-history traits in Atlantic salmon. (PubMedID: 20210987) BMC genomics
01/01/2010
Transcriptome profiling of a Sinorhizobium meliloti fadD mutant reveals the role of rhizobactin 1021 biosynthesis and regulation genes in the control of swarming. (PubMedID: 20210991) BMC genomics
01/01/2010
Germline-dependent gene expression in distant non-gonadal somatic tissues of Drosophila. (PubMedID: 20515475) BMC genomics
01/01/2010
Database of exact tandem repeats in the Zebrafish genome. (PubMedID: 20515480) BMC genomics
01/01/2010
Genome-wide identification of new Wnt/beta-catenin target genes in the human genome using CART method. (PubMedID: 20515496) BMC genomics
01/01/2010
Comparison of normalization methods for Illumina BeadChip HumanHT-12 v3. (PubMedID: 20525181) BMC genomics
01/01/2010
Identification of novel non-coding small RNAs from Streptococcus pneumoniae TIGR4 using high-resolution genome tiling arrays. (PubMedID: 20525227) BMC genomics
01/01/2010
An initial map of chromosomal segmental copy number variations in the chicken. (PubMedID: 20525236) BMC genomics
01/01/2010
Development of a novel splice array platform and its application in the identification of alternative splice variants in lung cancer. (PubMedID: 20525254) BMC genomics
01/01/2010
The hidden duplication past of the plant pathogen Phytophthora and its consequences for infection. (PubMedID: 20525264) BMC genomics
01/01/2010
Development of an oligo DNA microarray for the European sea bass and its application to expression profiling of jaw deformity. (PubMedID: 20525278) BMC genomics
01/01/2010
Identification of functional TFAP2A and SP1 binding sites in new TFAP2A-modulated genes. (PubMedID: 20525283) BMC genomics
01/01/2010
Identification and analysis of immune-related transcriptome in Asian seabass Lates calcarifer. (PubMedID: 20525308) BMC genomics
01/01/2010
Copy number variation and cytidine analogue cytotoxicity: a genome-wide association approach. (PubMedID: 20525348) BMC genomics
01/01/2010
Functional genomics of human bronchial epithelial cells directly interacting with conidia of Aspergillus fumigatus. (PubMedID: 20525375) BMC genomics
01/01/2010
Prediction of CpG-island function: CpG clustering vs. sliding-window methods. (PubMedID: 20500903) BMC genomics
01/01/2010
Inferring linkage disequilibrium from non-random samples. (PubMedID: 20504300) BMC genomics
01/01/2010
Transcriptome sequencing and comparative transcriptome analysis of the scleroglucan producer Sclerotium rolfsii. (PubMedID: 20504312) BMC genomics
01/01/2010
Cross-platform analysis of global microRNA expression technologies. (PubMedID: 20504329) BMC genomics
01/01/2010
Functional and gene network analyses of transcriptional signatures characterizing pre-weaned bovine mammary parenchyma or fat pad uncovered novel inter-tissue signaling networks during development. (PubMedID: 20504330) BMC genomics
01/01/2010
Understanding the evolutionary relationships and major traits of Bacillus through comparative genomics. (PubMedID: 20504335) BMC genomics
01/01/2010
Benzo(a)pyrene induces similar gene expression changes in testis of DNA repair proficient and deficient mice. (PubMedID: 20504355) BMC genomics
01/01/2010
Utility of sequenced genomes for microsatellite marker development in non-model organisms: a case study of functionally important genes in nine-spined sticklebacks (Pungitius pungitius). (PubMedID: 20507571) BMC genomics
01/01/2010
Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8. (PubMedID: 20507619) BMC genomics
01/01/2010
High gene expression of inflammatory markers and IL-17A correlates with severity of injection site reactions of Atlantic salmon vaccinated with oil-adjuvanted vaccines. (PubMedID: 20507624) BMC genomics
01/01/2010
A deletion mutation in bovine SLC4A2 is associated with osteopetrosis in Red Angus cattle. (PubMedID: 20507629) BMC genomics
01/01/2010
Genome-scale analysis and comparison of gene expression profiles in developing and germinated pollen in Oryza sativa. (PubMedID: 20507633) BMC genomics
01/01/2010
Generation of a BAC-based physical map of the melon genome. (PubMedID: 20509895) BMC genomics
01/01/2010
Classifying genes to the correct Gene Ontology Slim term in Saccharomyces cerevisiae using neighbouring genes with classification learning. (PubMedID: 20509921) BMC genomics
01/01/2010
Factorial microarray analysis of zebra mussel (Dreissena polymorpha: Dreissenidae, Bivalvia) adhesion. (PubMedID: 20509938) BMC genomics
01/01/2010
Bioinformatic identification and characterization of human endothelial cell-restricted genes. (PubMedID: 20509943) BMC genomics
01/01/2010
Regulation of the cardiomyocyte transcriptome vs translatome by endothelin-1 and insulin: translational regulation of 5' terminal oligopyrimidine tract (TOP) mRNAs by insulin. (PubMedID: 20509958) BMC genomics
01/01/2010
Paucity and preferential suppression of transgenes in late replication domains of the D. melanogaster genome. (PubMedID: 20492674) BMC genomics
01/01/2010
Genome-wide expression links the electron transfer pathway of Shewanella oneidensis to chemotaxis. (PubMedID: 20492688) BMC genomics
01/01/2010
A deep investigation into the adipogenesis mechanism: profile of microRNAs regulating adipogenesis by modulating the canonical Wnt/beta-catenin signaling pathway. (PubMedID: 20492721) BMC genomics
01/01/2010
Bioinformatic analysis of Entamoeba histolytica SINE1 elements. (PubMedID: 20497534) BMC genomics
01/01/2010
Functional and evolutionary correlates of gene constellations in the Drosophila melanogaster genome that deviate from the stereotypical gene architecture. (PubMedID: 20497561) BMC genomics
01/01/2010
Transcript profiling of two alfalfa genotypes with contrasting cell wall composition in stems using a cross-species platform: optimizing analysis by masking biased probes. (PubMedID: 20497574) BMC genomics
01/01/2010
Genomic profiling of tumor initiating prostatospheres. (PubMedID: 20500816) BMC genomics
01/01/2010
Metabolic flexibility revealed in the genome of the cyst-forming alpha-1 proteobacterium Rhodospirillum centenum. (PubMedID: 20500872) BMC genomics
01/01/2010
Genetic structure of the Spanish population. (PubMedID: 20500880) BMC genomics
01/01/2010
GC3 biology in corn, rice, sorghum and other grasses. (PubMedID: 20470436) BMC genomics
01/01/2010
Effects of Alu elements on global nucleosome positioning in the human genome. (PubMedID: 20478020) BMC genomics
01/01/2010
Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon. (PubMedID: 20478048) BMC genomics
01/01/2010
Proteomics reveals a core molecular response of Pseudomonas putida F1 to acute chromate challenge. (PubMedID: 20482812) BMC genomics
01/01/2010
Plasmodium infection alters Anopheles gambiae detoxification gene expression. (PubMedID: 20482856) BMC genomics
01/01/2010
The collapse of gene complement following whole genome duplication. (PubMedID: 20482863) BMC genomics
01/01/2010
Gene expression changes during caste-specific neuronal development in the damp-wood termite Hodotermopsis sjostedti. (PubMedID: 20482890) BMC genomics
01/01/2010
A simple optimization can improve the performance of single feature polymorphism detection by Affymetrix expression arrays. (PubMedID: 20482895) BMC genomics
01/01/2010
Identification of four novel small non-coding RNAs from Xanthomonas campestris pathovar campestris. (PubMedID: 20482898) BMC genomics
01/01/2010
Powdery mildew fungal effector candidates share N-terminal Y/F/WxC-motif. (PubMedID: 20487537) BMC genomics
01/01/2010
Transcriptome analysis of porcine PBMCs after in vitro stimulation by LPS or PMA/ionomycin using an expression array targeting the pig immune response. (PubMedID: 20459780) BMC genomics
01/01/2010
Ensembl variation resources. (PubMedID: 20459805) BMC genomics
01/01/2010
Consistent annotation of gene expression arrays. (PubMedID: 20459806) BMC genomics
01/01/2010
Touring Ensembl: a practical guide to genome browsing. (PubMedID: 20459808) BMC genomics
01/01/2010
A 454 multiplex sequencing method for rapid and reliable genotyping of highly polymorphic genes in large-scale studies. (PubMedID: 20459828) BMC genomics
01/01/2010
Systems genetics analysis of body weight and energy metabolism traits in Drosophila melanogaster. (PubMedID: 20459830) BMC genomics
01/01/2010
Multiplex Amplicon Quantification (MAQ), a fast and efficient method for the simultaneous detection of copy number alterations in neuroblastoma. (PubMedID: 20459859) BMC genomics
01/01/2010
A predicted physicochemically distinct sub-proteome associated with the intracellular organelle of the anammox bacterium Kuenenia stuttgartiensis. (PubMedID: 20459862) BMC genomics
01/01/2010
Proteomics-based confirmation of protein expression and correction of annotation errors in the Brucella abortus genome. (PubMedID: 20462421) BMC genomics
01/01/2010
A simple, high throughput method to locate single copy sequences from Bacterial Artificial Chromosome (BAC) libraries using High Resolution Melt analysis. (PubMedID: 20462427) BMC genomics
01/01/2010
Towards a membrane proteome in Drosophila: a method for the isolation of plasma membrane. (PubMedID: 20462449) BMC genomics
01/01/2010
Massively parallel pyrosequencing-based transcriptome analyses of small brown planthopper (Laodelphax striatellus), a vector insect transmitting rice stripe virus (RSV). (PubMedID: 20462456) BMC genomics
01/01/2010
A critical assessment of cross-species detection of gene duplicates using comparative genomic hybridization. (PubMedID: 20465839) BMC genomics
01/01/2010
Comparison and consolidation of microarray data sets of human tissue expression. (PubMedID: 20465848) BMC genomics
01/01/2010
Comparative genomics reveals a functional thyroid-specific element in the far upstream region of the PAX8 gene. (PubMedID: 20470391) BMC genomics
01/01/2010
Characterizing Ancylostoma caninum transcriptome and exploring nematode parasitic adaptation. (PubMedID: 20470405) BMC genomics
01/01/2010
Copy number variation in the bovine genome. (PubMedID: 20459598) BMC genomics
01/01/2010
Frequent and recent retrotransposition of orthologous genes plays a role in the evolution of sperm glycolytic enzymes. (PubMedID: 20459611) BMC genomics
01/01/2010
Most transcription factor binding sites are in a few mosaic classes of the human genome. (PubMedID: 20459624) BMC genomics
01/01/2010
Amplified fragment length homoplasy: in silico analysis for model and non-model species. (PubMedID: 20459671) BMC genomics
01/01/2010
Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral blood. (PubMedID: 20459673) BMC genomics
01/01/2010
In silico identification of the sea squirt selenoproteome. (PubMedID: 20459719) BMC genomics
01/01/2010
Analysis of gene evolution and metabolic pathways using the Candida Gene Order Browser. (PubMedID: 20459735) BMC genomics
01/01/2010
Computational prediction of the osmoregulation network in Synechococcus sp. WH8102. (PubMedID: 20459751) BMC genomics
01/01/2010
Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum. (PubMedID: 20444247) BMC genomics
01/01/2010
A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling. (PubMedID: 20444259) BMC genomics
01/01/2010
Genome-wide in silico screen for CCCH-type zinc finger proteins of Trypanosoma brucei, Trypanosoma cruzi and Leishmania major. (PubMedID: 20444260) BMC genomics
01/01/2010
Aryl hydrocarbon receptor (AHR)-regulated transcriptomic changes in rats sensitive or resistant to major dioxin toxicities. (PubMedID: 20420666) BMC genomics
01/01/2010
Global transcriptome analysis of spore formation in Myxococcus xanthus reveals a locus necessary for cell differentiation. (PubMedID: 20420673) BMC genomics
01/01/2010
Chronic activation of the epithelial immune system of the fruit fly's salivary glands has a negative effect on organismal growth and induces a peculiar set of target genes. (PubMedID: 20420686) BMC genomics
01/01/2010
Differences in transcription between free-living and CO2-activated third-stage larvae of Haemonchus contortus. (PubMedID: 20420710) BMC genomics
01/01/2010
Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms. (PubMedID: 20423466) BMC genomics
01/01/2010
EST analysis reveals putative genes involved in glycyrrhizin biosynthesis. (PubMedID: 20423525) BMC genomics
01/01/2010
High-throughput marker discovery in melon using a self-designed oligo microarray. (PubMedID: 20426811) BMC genomics
01/01/2010
Genomic organization of eukaryotic tRNAs. (PubMedID: 20426822) BMC genomics
01/01/2010
Using comparative genomic hybridization to survey genomic sequence divergence across species: a proof-of-concept from Drosophila. (PubMedID: 20429934) BMC genomics
01/01/2010
Microarray analysis of Shigella flexneri-infected epithelial cells identifies host factors important for apoptosis inhibition. (PubMedID: 20429941) BMC genomics
01/01/2010
A jackknife-like method for classification and uncertainty assessment of multi-category tumor samples using gene expression information. (PubMedID: 20429942) BMC genomics
01/01/2010
Novel methods to identify biologically relevant genes for leukemia and prostate cancer from gene expression profiles. (PubMedID: 20433712) BMC genomics
01/01/2010
Deciphering the porcine intestinal microRNA transcriptome. (PubMedID: 20433717) BMC genomics
01/01/2010
A survey of well conserved families of C2H2 zinc-finger genes in Daphnia. (PubMedID: 20433734) BMC genomics
01/01/2010
Genome-wide analysis of tandem repeats in Daphnia pulex--a comparative approach. (PubMedID: 20433735) BMC genomics
01/01/2010
An EST resource for tilapia based on 17 normalized libraries and assembly of 116,899 sequence tags. (PubMedID: 20433739) BMC genomics
01/01/2010
Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. (PubMedID: 20433749) BMC genomics
01/01/2010
Genome wide scan for quantitative trait loci affecting tick resistance in cattle (Bos taurus x Bos indicus). (PubMedID: 20433753) BMC genomics
01/01/2010
Genome response to tissue plasminogen activator in experimental ischemic stroke. (PubMedID: 20406488) BMC genomics
01/01/2010
Reconstruction of xylose utilization pathway and regulons in Firmicutes. (PubMedID: 20406496) BMC genomics
01/01/2010
Validation of a mouse xenograft model system for gene expression analysis of human acute lymphoblastic leukaemia. (PubMedID: 20406497) BMC genomics
01/01/2010
Core promoter structure and genomic context reflect histone 3 lysine 9 acetylation patterns. (PubMedID: 20409305) BMC genomics
01/01/2010
Large genomic differences between the morphologically indistinguishable diplomonads Spironucleus barkhanus and Spironucleus salmonicida. (PubMedID: 20409319) BMC genomics
01/01/2010
Major role for mRNA stability in shaping the kinetics of gene induction. (PubMedID: 20409322) BMC genomics
01/01/2010
Origin and fate of pseudogenes in Hemiascomycetes: a comparative analysis. (PubMedID: 20412590) BMC genomics
01/01/2010
Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes. (PubMedID: 20416060) BMC genomics
01/01/2010
De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX Titanium platform to discover putative genes involved in ginsenoside biosynthesis. (PubMedID: 20416102) BMC genomics
01/01/2010
Finishing genomes with limited resources: lessons from an ensemble of microbial genomes. (PubMedID: 20398345) BMC genomics
01/01/2010
Whole genome assembly of a natto production strain Bacillus subtilis natto from very short read data. (PubMedID: 20398357) BMC genomics
01/01/2010
DNA copy number, including telomeres and mitochondria, assayed using next-generation sequencing. (PubMedID: 20398377) BMC genomics
01/01/2010
A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti. (PubMedID: 20398411) BMC genomics
01/01/2010
Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type. (PubMedID: 20398412) BMC genomics
01/01/2010
The complete genome of Zunongwangia profunda SM-A87 reveals its adaptation to the deep-sea environment and ecological role in sedimentary organic nitrogen degradation. (PubMedID: 20398413) BMC genomics
01/01/2010
Comparative gene expression in toxic versus non-toxic strains of the marine dinoflagellate Alexandrium minutum. (PubMedID: 20403159) BMC genomics
01/01/2010
Small RNA expression and strain specificity in the rat. (PubMedID: 20403161) BMC genomics
01/01/2010
The DUB/USP17 deubiquitinating enzymes: a gene family within a tandemly repeated sequence, is also embedded within the copy number variable beta-defensin cluster. (PubMedID: 20403174) BMC genomics
01/01/2010
Transcriptome sequencing and development of an expression microarray platform for the domestic ferret. (PubMedID: 20403183) BMC genomics
01/01/2010
Haplotyping and copy number estimation of the highly polymorphic human beta-defensin locus on 8p23 by 454 amplicon sequencing. (PubMedID: 20403190) BMC genomics
01/01/2010
Gene expression changes in mononuclear cells in patients with metabolic syndrome after acute intake of phenol-rich virgin olive oil. (PubMedID: 20406432) BMC genomics
01/01/2010
Plasmodium falciparum spermidine synthase inhibition results in unique perturbation-specific effects observed on transcript, protein and metabolite levels. (PubMedID: 20385001) BMC genomics
01/01/2010
A toolkit for rapid gene mapping in the nematode Caenorhabditis briggsae. (PubMedID: 20385026) BMC genomics
01/01/2010
Thioredoxin and glutathione systems differ in parasitic and free-living platyhelminths. (PubMedID: 20385027) BMC genomics
01/01/2010
Novel insights into the genomic basis of citrus canker based on the genome sequences of two strains of Xanthomonas fuscans subsp. aurantifolii. (PubMedID: 20388224) BMC genomics
01/01/2010
Pyrosequencing-based comparative genome analysis of the nosocomial pathogen Enterococcus faecium and identification of a large transferable pathogenicity island. (PubMedID: 20398277) BMC genomics
01/01/2010
Genes related to the very early stage of ConA-induced fulminant hepatitis: a gene-chip-based study in a mouse model. (PubMedID: 20398290) BMC genomics
01/01/2010
Signal pathways JNK and NF-kappaB, identified by global gene expression profiling, are involved in regulation of TNFalpha-induced mPGES-1 and COX-2 expression in gingival fibroblasts. (PubMedID: 20398340) BMC genomics
01/01/2010
g you The direct determination of haplotypes from extended regions of genomic DNA. (PubMedID: 20370899) BMC genomics
01/01/2010
Intronic microRNAs support their host genes by mediating synergistic and antagonistic regulatory effects. (PubMedID: 20370903) BMC genomics
01/01/2010
Differential transcript expression between the microfilariae of the filarial nematodes, Brugia malayi and B. pahangi. (PubMedID: 20370932) BMC genomics
01/01/2010
Genome-wide comparison between IL-17 and combined TNF-alpha/IL-17 induced genes in primary murine hepatocytes. (PubMedID: 20374638) BMC genomics
01/01/2010
Survey of transcripts expressed by the invasive juvenile stage of the liver fluke Fasciola hepatica. (PubMedID: 20374642) BMC genomics
01/01/2010
The Alveolate Perkinsus marinus: biological insights from EST gene discovery. (PubMedID: 20374649) BMC genomics