Medical Research Articles Published in January 2012

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01/01/2012
Neurogenesis drives stimulus decorrelation in a model of the olfactory bulb. (PubMedID: 22442645) PLoS computational biology
01/01/2012
Impact of network structure and cellular response on spike time correlations. (PubMedID: 22457608) PLoS computational biology
01/01/2012
Implications of behavioral architecture for the evolution of self-organized division of labor. (PubMedID: 22457609) PLoS computational biology
01/01/2012
Feedforward inhibition and synaptic scaling--two sides of the same coin? (PubMedID: 22457610) PLoS computational biology
01/01/2012
Corresponding functional dynamics across the Hsp90 Chaperone family: insights from a multiscale analysis of MD simulations. (PubMedID: 22457611) PLoS computational biology
01/01/2012
Hemodynamic traveling waves in human visual cortex. (PubMedID: 22457612) PLoS computational biology
01/01/2012
Influence of the fibroblastic reticular network on cell-cell interactions in lymphoid organs. (PubMedID: 22457613) PLoS computational biology
01/01/2012
Dynamic effective connectivity of inter-areal brain circuits. (PubMedID: 22457614) PLoS computational biology
01/01/2012
Traffic instabilities in self-organized pedestrian crowds. (PubMedID: 22457615) PLoS computational biology
01/01/2012
Neural network mechanisms underlying stimulus driven variability reduction. (PubMedID: 22479168) PLoS computational biology
01/01/2012
Thermodynamic state ensemble models of cis-regulation. (PubMedID: 22479169) PLoS computational biology
01/01/2012
Collective dynamics differentiates functional divergence in protein evolution. (PubMedID: 22479170) PLoS computational biology
01/01/2012
Ten simple rules for starting a company. (PubMedID: 22479171) PLoS computational biology
01/01/2012
Decoding unattended fearful faces with whole-brain correlations: an approach to identify condition-dependent large-scale functional connectivity. (PubMedID: 22479172) PLoS computational biology
01/01/2012
"Guilt by association" is the exception rather than the rule in gene networks. (PubMedID: 22479173) PLoS computational biology
01/01/2012
Topic pages: PLoS Computational Biology meets Wikipedia. (PubMedID: 22479174) PLoS computational biology
01/01/2012
The rate of beneficial mutations surfing on the wave of a range expansion. (PubMedID: 22479175) PLoS computational biology
01/01/2012
Dynamical modeling of collective behavior from pigeon flight data: flock cohesion and dispersion. (PubMedID: 22479176) PLoS computational biology
01/01/2012
Comprehensive modelling of the Neurospora circadian clock and its temperature compensation. (PubMedID: 22496627) PLoS computational biology
01/01/2012
Circular permutation in proteins. (PubMedID: 22496628) PLoS computational biology
01/01/2012
Replication fork polarity gradients revealed by megabase-sized U-shaped replication timing domains in human cell lines. (PubMedID: 22496629) PLoS computational biology
01/01/2012
Molecular machines in the synapse: overlapping protein sets control distinct steps in neurosecretion. (PubMedID: 22496630) PLoS computational biology
01/01/2012
Evolutionary game theory and social learning can determine how vaccine scares unfold. (PubMedID: 22496631) PLoS computational biology
01/01/2012
Automatic filtering and substantiation of drug safety signals. (PubMedID: 22496632) PLoS computational biology
01/01/2012
What can causal networks tell us about metabolic pathways? (PubMedID: 22496633) PLoS computational biology
01/01/2012
Parameters in dynamic models of complex traits are containers of missing heritability. (PubMedID: 22496634) PLoS computational biology
01/01/2012
Energetic selection of topology in ferredoxins. (PubMedID: 22496635) PLoS computational biology
01/01/2012
RNA-Seq mapping and detection of gene fusions with a suffix array algorithm. (PubMedID: 22496636) PLoS computational biology
01/01/2012
On conduction in a bacterial sodium channel. (PubMedID: 22496637) PLoS computational biology
01/01/2012
Evolution of the multi-domain structures of virulence genes in the human malaria parasite, Plasmodium falciparum. (PubMedID: 22511852) PLoS computational biology
01/01/2012
A new perceptual bias reveals suboptimal population decoding of sensory responses. (PubMedID: 22511853) PLoS computational biology
01/01/2012
Quantifying type-specific reproduction numbers for nosocomial pathogens: evidence for heightened transmission of an Asian sequence type 239 MRSA clone. (PubMedID: 22511854) PLoS computational biology
01/01/2012
Warm body temperature facilitates energy efficient cortical action potentials. (PubMedID: 22511855) PLoS computational biology
01/01/2012
Power-law inter-spike interval distributions infer a conditional maximization of entropy in cortical neurons. (PubMedID: 22511856) PLoS computational biology
01/01/2012
Optimization of muscle activity for task-level goals predicts complex changes in limb forces across biomechanical contexts. (PubMedID: 22511857) PLoS computational biology
01/01/2012
Differences in cell division rates drive the evolution of terminal differentiation in microbes. (PubMedID: 22511858) PLoS computational biology
01/01/2012
The impact of imitation on vaccination behavior in social contact networks. (PubMedID: 22511859) PLoS computational biology
01/01/2012
Optimizing provider recruitment for influenza surveillance networks. (PubMedID: 22511860) PLoS computational biology
01/01/2012
Impact of adaptation currents on synchronization of coupled exponential integrate-and-fire neurons. (PubMedID: 22511861) PLoS computational biology
01/01/2012
Establishment and validation of computational model for MT1-MMP dependent ECM degradation and intervention strategies. (PubMedID: 22511862) PLoS computational biology
01/01/2012
Mapping the environmental fitness landscape of a synthetic gene circuit. (PubMedID: 22511863) PLoS computational biology
01/01/2012
Genome-scale modeling of light-driven reductant partitioning and carbon fluxes in diazotrophic unicellular cyanobacterium Cyanothece sp. ATCC 51142. (PubMedID: 22529767) PLoS computational biology
01/01/2012
Non-additive coupling enables propagation of synchronous spiking activity in purely random networks. (PubMedID: 22532791) PLoS computational biology
01/01/2012
Exploration of multi-state conformational dynamics and underlying global functional landscape of maltose binding protein. (PubMedID: 22532792) PLoS computational biology
01/01/2012
Ligand-dependent conformations and dynamics of the serotonin 5-HT(2A) receptor determine its activation and membrane-driven oligomerization properties. (PubMedID: 22532793) PLoS computational biology
01/01/2012
Persisting viral sequences shape microbial CRISPR-based immunity. (PubMedID: 22532794) PLoS computational biology
01/01/2012
Computational design of a PDZ domain peptide inhibitor that rescues CFTR activity. (PubMedID: 22532795) PLoS computational biology
01/01/2012
Inference of genotype-phenotype relationships in the antigenic evolution of human influenza A (H3N2) viruses. (PubMedID: 22532796) PLoS computational biology
01/01/2012
The emergence and early evolution of biological carbon-fixation. (PubMedID: 22536150) PLoS computational biology
01/01/2012
The effects of NMDA subunit composition on calcium influx and spike timing-dependent plasticity in striatal medium spiny neurons. (PubMedID: 22536151) PLoS computational biology
01/01/2012
Geometric theory predicts bifurcations in minimal wiring cost trees in biology are flat. (PubMedID: 22557937) PLoS computational biology
01/01/2012
Storage of correlated patterns in standard and bistable Purkinje cell models. (PubMedID: 22570592) PLoS computational biology
01/01/2012
Deconvolution of the cellular force-generating subsystems that govern cytokinesis furrow ingression. (PubMedID: 22570593) PLoS computational biology
01/01/2012
Determinants of sexual network structure and their impact on cumulative network measures. (PubMedID: 22570594) PLoS computational biology
01/01/2012
Modeling planarian regeneration: a primer for reverse-engineering the worm. (PubMedID: 22570595) PLoS computational biology
01/01/2012
Exploring the contextual sensitivity of factors that determine cell-to-cell variability in receptor-mediated apoptosis. (PubMedID: 22570596) PLoS computational biology
01/01/2012
Testing biochemistry revisited: how in vivo metabolism can be understood from in vitro enzyme kinetics. (PubMedID: 22570597) PLoS computational biology
01/01/2012
Theoretical analysis of competing conformational transitions in superhelical DNA. (PubMedID: 22570598) PLoS computational biology
01/01/2012
Microarray analysis of LTR retrotransposon silencing identifies Hdac1 as a regulator of retrotransposon expression in mouse embryonic stem cells. (PubMedID: 22570599) PLoS computational biology
01/01/2012
Rise and demise of bioinformatics? Promise and progress. (PubMedID: 22570600) PLoS computational biology
01/01/2012
Predictive features of persistent activity emergence in regular spiking and intrinsic bursting model neurons. (PubMedID: 22570601) PLoS computational biology
01/01/2012
Challenges and new approaches to proving the existence of muscle synergies of neural origin. (PubMedID: 22570602) PLoS computational biology
01/01/2012
Adhesion failures determine the pattern of choroidal neovascularization in the eye: a computer simulation study. (PubMedID: 22570603) PLoS computational biology
01/01/2012
Homeostatic scaling of excitability in recurrent neural networks. (PubMedID: 22570604) PLoS computational biology
01/01/2012
Modeling meiotic chromosomes indicates a size dependent contribution of telomere clustering and chromosome rigidity to homologue juxtaposition. (PubMedID: 22570605) PLoS computational biology
01/01/2012
Tension and robustness in multitasking cellular networks. (PubMedID: 22577355) PLoS computational biology
01/01/2012
Social interaction, noise and antibiotic-mediated switches in the intestinal microbiota. (PubMedID: 22577356) PLoS computational biology
01/01/2012
Are long-range structural correlations behind the aggregration phenomena of polyglutamine diseases? (PubMedID: 22577357) PLoS computational biology
01/01/2012
NIBBS-search for fast and accurate prediction of phenotype-biased metabolic systems. (PubMedID: 22589706) PLoS computational biology
01/01/2012
Intermittent motion in desert locusts: behavioural complexity in simple environments. (PubMedID: 22589707) PLoS computational biology
01/01/2012
Virus capsid dissolution studied by microsecond molecular dynamics simulations. (PubMedID: 22589708) PLoS computational biology
01/01/2012
Prediction of drug-target interactions and drug repositioning via network-based inference. (PubMedID: 22589709) PLoS computational biology
01/01/2012
Filament compliance influences cooperative activation of thin filaments and the dynamics of force production in skeletal muscle. (PubMedID: 22589710) PLoS computational biology
01/01/2012
Modeling HIV-1 drug resistance as episodic directional selection. (PubMedID: 22589711) PLoS computational biology
01/01/2012
Dynamic prestress in a globular protein. (PubMedID: 22589712) PLoS computational biology
01/01/2012
A spatial model of mosquito host-seeking behavior. (PubMedID: 22615546) PLoS computational biology
01/01/2012
Insights into the fold organization of TIM barrel from interaction energy based structure networks. (PubMedID: 22615547) PLoS computational biology
01/01/2012
Optimal control of saccades by spatial-temporal activity patterns in the monkey superior colliculus. (PubMedID: 22615548) PLoS computational biology
01/01/2012
Google goes cancer: improving outcome prediction for cancer patients by network-based ranking of marker genes. (PubMedID: 22615549) PLoS computational biology
01/01/2012
Mechanical stress inference for two dimensional cell arrays. (PubMedID: 22615550) PLoS computational biology
01/01/2012
Resolving the ortholog conjecture: orthologs tend to be weakly, but significantly, more similar in function than paralogs. (PubMedID: 22615551) PLoS computational biology
01/01/2012
Proteome sampling by the HLA class I antigen processing pathway. (PubMedID: 22615552) PLoS computational biology
01/01/2012
Reconstruction of genome-scale active metabolic networks for 69 human cell types and 16 cancer types using INIT. (PubMedID: 22615553) PLoS computational biology
01/01/2012
The layer-oriented approach to declarative languages for biological modeling. (PubMedID: 22615554) PLoS computational biology
01/01/2012
Emergence of a small-world functional network in cultured neurons. (PubMedID: 22615555) PLoS computational biology
01/01/2012
Network topologies and dynamics leading to endotoxin tolerance and priming in innate immune cells. (PubMedID: 22615556) PLoS computational biology
01/01/2012
Crossing over...Markov meets Mendel. (PubMedID: 22629235) PLoS computational biology
01/01/2012
Measuring Granger causality between cortical regions from voxelwise fMRI BOLD signals with LASSO. (PubMedID: 22654651) PLoS computational biology
01/01/2012
A two-dimensional model of the colonic crypt accounting for the role of the basement membrane and pericryptal fibroblast sheath. (PubMedID: 22654652) PLoS computational biology
01/01/2012
Optimality of human contour integration. (PubMedID: 22654653) PLoS computational biology
01/01/2012
Conformational spread in the flagellar motor switch: a model study. (PubMedID: 22654654) PLoS computational biology
01/01/2012
Identification of molecular pathologies sufficient to cause neuropathic excitability in primary somatosensory afferents using dynamical systems theory. (PubMedID: 22654655) PLoS computational biology
01/01/2012
Estimating the fitness cost of escape from HLA presentation in HIV-1 protease and reverse transcriptase. (PubMedID: 22654656) PLoS computational biology
01/01/2012
A computational investigation on the connection between dynamics properties of ribosomal proteins and ribosome assembly. (PubMedID: 22654657) PLoS computational biology
01/01/2012
Structural drift: the population dynamics of sequential learning. (PubMedID: 22685387) PLoS computational biology
01/01/2012
Standing genetic variation and the evolution of drug resistance in HIV. (PubMedID: 22685388) PLoS computational biology
01/01/2012
Fine-tuning tomato agronomic properties by computational genome redesign. (PubMedID: 22685389) PLoS computational biology
01/01/2012
Structural and dynamic requirements for optimal activity of the essential bacterial enzyme dihydrodipicolinate synthase. (PubMedID: 22685390) PLoS computational biology
01/01/2012
Integrative approach to pain genetics identifies pain sensitivity loci across diseases. (PubMedID: 22685391) PLoS computational biology
01/01/2012
A maximum entropy test for evaluating higher-order correlations in spike counts. (PubMedID: 22685392) PLoS computational biology
01/01/2012
A platform-independent method for detecting errors in metagenomic sequencing data: DRISEE. (PubMedID: 22685393) PLoS computational biology
01/01/2012
Sarcomeric pattern formation by actin cluster coalescence. (PubMedID: 22685394) PLoS computational biology
01/01/2012
Minimum free energy path of ligand-induced transition in adenylate kinase. (PubMedID: 22685395) PLoS computational biology
01/01/2012
Metabolic reconstruction for metagenomic data and its application to the human microbiome. (PubMedID: 22719234) PLoS computational biology
01/01/2012
The role of non-native interactions in the folding of knotted proteins. (PubMedID: 22719235) PLoS computational biology
01/01/2012
Visualization and analysis of 3D microscopic images. (PubMedID: 22719236) PLoS computational biology
01/01/2012
Fast coding of orientation in primary visual cortex. (PubMedID: 22719237) PLoS computational biology
01/01/2012
Spine calcium transients induced by synaptically-evoked action potentials can predict synapse location and establish synaptic democracy. (PubMedID: 22719238) PLoS computational biology
01/01/2012
Complex spatial dynamics of oncolytic viruses in vitro: mathematical and experimental approaches. (PubMedID: 22719239) PLoS computational biology
01/01/2012
Location-dependent effects of inhibition on local spiking in pyramidal neuron dendrites. (PubMedID: 22719240) PLoS computational biology
01/01/2012
The impact of phenotypic switching on glioblastoma growth and invasion. (PubMedID: 22719241) PLoS computational biology
01/01/2012
Probing the mutational interplay between primary and promiscuous protein functions: a computational-experimental approach. (PubMedID: 22719242) PLoS computational biology
01/01/2012
Computing with neural synchrony. (PubMedID: 22719243) PLoS computational biology
01/01/2012
Charge profile analysis reveals that activation of pro-apoptotic regulators Bax and Bak relies on charge transfer mediated allosteric regulation. (PubMedID: 22719244) PLoS computational biology
01/01/2012
Modelling cell polarization driven by synthetic spatially graded Rac activation. (PubMedID: 22737059) PLoS computational biology
01/01/2012
Potassium starvation in yeast: mechanisms of homeostasis revealed by mathematical modeling. (PubMedID: 22737060) PLoS computational biology
01/01/2012
Protein scaffolds can enhance the bistability of multisite phosphorylation systems. (PubMedID: 22737061) PLoS computational biology
01/01/2012
Short term synaptic depression imposes a frequency dependent filter on synaptic information transfer. (PubMedID: 22737062) PLoS computational biology
01/01/2012
Multiple genetic interaction experiments provide complementary information useful for gene function prediction. (PubMedID: 22737063) PLoS computational biology
01/01/2012
Complementarity of spike- and rate-based dynamics of neural systems. (PubMedID: 22737064) PLoS computational biology
01/01/2012
A scalable algorithm to explore the Gibbs energy landscape of genome-scale metabolic networks. (PubMedID: 22737065) PLoS computational biology
01/01/2012
MC EMiNEM maps the interaction landscape of the Mediator. (PubMedID: 22737066) PLoS computational biology
01/01/2012
Equation-free analysis of two-component system signalling model reveals the emergence of co-existing phenotypes in the absence of multistationarity. (PubMedID: 22761552) PLoS computational biology
01/01/2012
Viral perturbations of host networks reflect disease etiology. (PubMedID: 22761553) PLoS computational biology
01/01/2012
What can systems theory of networks offer to biology? (PubMedID: 22761554) PLoS computational biology
01/01/2012
Prosthetic avian vocal organ controlled by a freely behaving bird based on a low dimensional model of the biomechanical periphery. (PubMedID: 22761555) PLoS computational biology
01/01/2012
Simple epidemiological dynamics explain phylogenetic clustering of HIV from patients with recent infection. (PubMedID: 22761556) PLoS computational biology
01/01/2012
Modeling boundary vector cell firing given optic flow as a cue. (PubMedID: 22761557) PLoS computational biology
01/01/2012
Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations. (PubMedID: 22761558) PLoS computational biology
01/01/2012
ProteinHistorian: tools for the comparative analysis of eukaryote protein origin. (PubMedID: 22761559) PLoS computational biology
01/01/2012
A report of the Curriculum Task Force of the ISCB Education Committee. (PubMedID: 22761560) PLoS computational biology
01/01/2012
Virtual patients and sensitivity analysis of the Guyton model of blood pressure regulation: towards individualized models of whole-body physiology. (PubMedID: 22761561) PLoS computational biology
01/01/2012
Bringing molecules back into molecular evolution. (PubMedID: 22761562) PLoS computational biology
01/01/2012
A model-based Bayesian estimation of the rate of evolution of VNTR loci in Mycobacterium tuberculosis. (PubMedID: 22761563) PLoS computational biology
01/01/2012
Deceleration of fusion-fission cycles improves mitochondrial quality control during aging. (PubMedID: 22761564) PLoS computational biology
01/01/2012
Quantifying the contribution of the liver to glucose homeostasis: a detailed kinetic model of human hepatic glucose metabolism. (PubMedID: 22761565) PLoS computational biology
01/01/2012
From dynamic expression patterns to boundary formation in the presomitic mesoderm. (PubMedID: 22761566) PLoS computational biology
01/01/2012
Modeling within-host dynamics of influenza virus infection including immune responses. (PubMedID: 22761567) PLoS computational biology
01/01/2012
Learning with slight forgetting optimizes sensorimotor transformation in redundant motor systems. (PubMedID: 22761568) PLoS computational biology
01/01/2012
Prediction of microbial growth rate versus biomass yield by a metabolic network with kinetic parameters. (PubMedID: 22792053) PLoS computational biology
01/01/2012
The generation of phase differences and frequency changes in a network model of inferior olive subthreshold oscillations. (PubMedID: 22792054) PLoS computational biology
01/01/2012
Quantifying and analyzing the network basis of genetic complexity. (PubMedID: 22792055) PLoS computational biology
01/01/2012
Spectral analysis of input spike trains by spike-timing-dependent plasticity. (PubMedID: 22792056) PLoS computational biology
01/01/2012
Network-assisted investigation of combined causal signals from genome-wide association studies in schizophrenia. (PubMedID: 22792057) PLoS computational biology
01/01/2012
Automated tracking of whiskers in videos of head fixed rodents. (PubMedID: 22792058) PLoS computational biology
01/01/2012
Predicting signatures of "synthetic associations" and "natural associations" from empirical patterns of human genetic variation. (PubMedID: 22792059) PLoS computational biology
01/01/2012
Data sharing in the post-genomic world: the experience of the International Cancer Genome Consortium (ICGC) Data Access Compliance Office (DACO). (PubMedID: 22807659) PLoS computational biology
01/01/2012
Bioinformatics meets user-centred design: a perspective. (PubMedID: 22807660) PLoS computational biology
01/01/2012
Excitatory local interneurons enhance tuning of sensory information. (PubMedID: 22807661) PLoS computational biology
01/01/2012
Coding conspecific identity and motion in the electric sense. (PubMedID: 22807662) PLoS computational biology
01/01/2012
Adaptive temperature compensation in circadian oscillations. (PubMedID: 22807663) PLoS computational biology
01/01/2012
Efficient reverse-engineering of a developmental gene regulatory network. (PubMedID: 22807664) PLoS computational biology
01/01/2012
Sparse codes for speech predict spectrotemporal receptive fields in the inferior colliculus. (PubMedID: 22807665) PLoS computational biology
01/01/2012
A nonlinear dynamic approach reveals a long-term stroke effect on cerebral blood flow regulation at multiple time scales. (PubMedID: 22807666) PLoS computational biology
01/01/2012
Efficiency and power as a function of sequence coverage, SNP array density, and imputation. (PubMedID: 22807667) PLoS computational biology
01/01/2012
Microbial co-occurrence relationships in the human microbiome. (PubMedID: 22807668) PLoS computational biology
01/01/2012
Importance of electrostatic interactions in the association of intrinsically disordered histone chaperone Chz1 and histone H2A.Z-H2B. (PubMedID: 22807669) PLoS computational biology
01/01/2012
Rational engineering of enzyme allosteric regulation through sequence evolution analysis. (PubMedID: 22807670) PLoS computational biology
01/01/2012
Uncovering MicroRNA and Transcription Factor Mediated Regulatory Networks in Glioblastoma. (PubMedID: 22829753) PLoS computational biology
01/01/2012
Shaping the dynamics of a bidirectional neural interface. (PubMedID: 22829754) PLoS computational biology
01/01/2012
Modular design of artificial tissue homeostasis: robust control through synthetic cellular heterogeneity. (PubMedID: 22829755) PLoS computational biology
01/01/2012
Individual rules for trail pattern formation in Argentine ants (Linepithema humile). (PubMedID: 22829756) PLoS computational biology
01/01/2012
GDP release preferentially occurs on the phosphate side in heterotrimeric G-proteins. (PubMedID: 22829757) PLoS computational biology
01/01/2012
Suppressed expression of T-box transcription factors is involved in senescence in chronic obstructive pulmonary disease. (PubMedID: 22829758) PLoS computational biology
01/01/2012
Location-dependent excitatory synaptic interactions in pyramidal neuron dendrites. (PubMedID: 22829759) PLoS computational biology
01/01/2012
A preformed binding interface in the unbound ensemble of an intrinsically disordered protein: evidence from molecular simulations. (PubMedID: 22829760) PLoS computational biology
01/01/2012
A range-normalization model of context-dependent choice: a new model and evidence. (PubMedID: 22829761) PLoS computational biology
01/01/2012
Which of our modeling predictions are robust? (PubMedID: 22844235) PLoS computational biology
01/01/2012
A quick guide to software licensing for the scientist-programmer. (PubMedID: 22844236) PLoS computational biology
01/01/2012
An integrated regulatory network reveals pervasive cross-regulation among transcription and splicing factors. (PubMedID: 22844237) PLoS computational biology
01/01/2012
Modeling of pharmacokinetics of cocaine in human reveals the feasibility for development of enzyme therapies for drugs of abuse. (PubMedID: 22844238) PLoS computational biology
01/01/2012
Why SIT works: normal function despite typical myofiber pattern in Situs Inversus Totalis (SIT) hearts derived by shear-induced myofiber reorientation. (PubMedID: 22844239) PLoS computational biology
01/01/2012
Genome-wide localization of protein-DNA binding and histone modification by a Bayesian change-point method with ChIP-seq data. (PubMedID: 22844240) PLoS computational biology
01/01/2012
Digital epidemiology. (PubMedID: 22844241) PLoS computational biology
01/01/2012
Finding a needle in a haystack: the role of electrostatics in target lipid recognition by PH domains. (PubMedID: 22844242) PLoS computational biology
01/01/2012
Assessing drug target association using semantic linked data. (PubMedID: 22859915) PLoS computational biology
01/01/2012
Interplay between the localization and kinetics of phosphorylation in flagellar pole development of the bacterium Caulobacter crescentus. (PubMedID: 22876167) PLoS computational biology
01/01/2012
Mutation induced extinction in finite populations: lethal mutagenesis and lethal isolation. (PubMedID: 22876168) PLoS computational biology
01/01/2012
Molecular constraints on synaptic tagging and maintenance of long-term potentiation: a predictive model. (PubMedID: 22876169) PLoS computational biology
01/01/2012
Alternative protein-protein interfaces are frequent exceptions. (PubMedID: 22876170) PLoS computational biology
01/01/2012
Inferring dynamic signatures of microbes in complex host ecosystems. (PubMedID: 22876171) PLoS computational biology
01/01/2012
The role of local backrub motions in evolved and designed mutations. (PubMedID: 22876172) PLoS computational biology
01/01/2012
A topological paradigm for hippocampal spatial map formation using persistent homology. (PubMedID: 22912564) PLoS computational biology
01/01/2012
Literature based drug interaction prediction with clinical assessment using electronic medical records: novel myopathy associated drug interactions. (PubMedID: 22912565) PLoS computational biology
01/01/2012
Hybrid models and biological model reduction with PyDSTool. (PubMedID: 22912566) PLoS computational biology
01/01/2012
A canonical model of multistability and scale-invariance in biological systems. (PubMedID: 22912567) PLoS computational biology
01/01/2012
High resolution genome wide binding event finding and motif discovery reveals transcription factor spatial binding constraints. (PubMedID: 22912568) PLoS computational biology
01/01/2012
Intrinsic disorder in the human spliceosomal proteome. (PubMedID: 22912569) PLoS computational biology
01/01/2012
The landscape of the prion protein's structural response to mutation revealed by principal component analysis of multiple NMR ensembles. (PubMedID: 22912570) PLoS computational biology
01/01/2012
Activity dependent degeneration explains hub vulnerability in Alzheimer's disease. (PubMedID: 22915996) PLoS computational biology
01/01/2012
Combining the finite element method with structural connectome-based analysis for modeling neurotrauma: connectome neurotrauma mechanics. (PubMedID: 22915997) PLoS computational biology
01/01/2012
Single nucleotide polymorphisms can create alternative polyadenylation signals and affect gene expression through loss of microRNA-regulation. (PubMedID: 22915998) PLoS computational biology
01/01/2012
Unifying time to contact estimation and collision avoidance across species. (PubMedID: 22915999) PLoS computational biology
01/01/2012
Evolution of stress response in the face of unreliable environmental signals. (PubMedID: 22916000) PLoS computational biology
01/01/2012
Gene network homology in prokaryotes using a similarity search approach: queries of quorum sensing signal transduction. (PubMedID: 22916001) PLoS computational biology
01/01/2012
A network-based approach for predicting missing pathway interactions. (PubMedID: 22916002) PLoS computational biology
01/01/2012
Locust dynamics: behavioral phase change and swarming. (PubMedID: 22916003) PLoS computational biology
01/01/2012
A simple histone code opens many paths to epigenetics. (PubMedID: 22916004) PLoS computational biology
01/01/2012
Assessing the relative stability of dimer interfaces in g protein-coupled receptors. (PubMedID: 22916005) PLoS computational biology
01/01/2012
Maintaining a cognitive map in darkness: the need to fuse boundary knowledge with path integration. (PubMedID: 22916006) PLoS computational biology
01/01/2012
Functional roles for synaptic-depression within a model of the fly antennal lobe. (PubMedID: 22927802) PLoS computational biology
01/01/2012
Modeling of gap gene expression in Drosophila Kruppel mutants. (PubMedID: 22927803) PLoS computational biology
01/01/2012
Prediction of mutational tolerance in HIV-1 protease and reverse transcriptase using flexible backbone protein design. (PubMedID: 22927804) PLoS computational biology
01/01/2012
Defining the nature of thermal intermediate in 3 state folding proteins: apoflavodoxin, a study case. (PubMedID: 22927805) PLoS computational biology
01/01/2012
Diversity and noise effects in a model of homeostatic regulation of the sleep-wake cycle. (PubMedID: 22927806) PLoS computational biology
01/01/2012
Evolutionary dynamics of strategic behavior in a collective-risk dilemma. (PubMedID: 22927807) PLoS computational biology
01/01/2012
Model-free reconstruction of excitatory neuronal connectivity from calcium imaging signals. (PubMedID: 22927808) PLoS computational biology
01/01/2012
Artificial neural networks trained to detect viral and phage structural proteins. (PubMedID: 22927809) PLoS computational biology
01/01/2012
Allosteric communication across the native and mutated KIT receptor tyrosine kinase. (PubMedID: 22927810) PLoS computational biology
01/01/2012
The regulation of ant colony foraging activity without spatial information. (PubMedID: 22927811) PLoS computational biology
01/01/2012
Coupling mechanical deformations and planar cell polarity to create regular patterns in the zebrafish retina. (PubMedID: 22936893) PLoS computational biology
01/01/2012
Versatility and invariance in the evolution of homologous heteromeric interfaces. (PubMedID: 22952442) PLoS computational biology
01/01/2012
The roots of bioinformatics in ISMB. (PubMedID: 22952443) PLoS computational biology
01/01/2012
On genetic specificity in symbiont-mediated host-parasite coevolution. (PubMedID: 22956894) PLoS computational biology
01/01/2012
Design and implementation of a genomics field trip program aimed at secondary school students. (PubMedID: 22956895) PLoS computational biology
01/01/2012
Teasing apart translational and transcriptional components of stochastic variations in eukaryotic gene expression. (PubMedID: 22956896) PLoS computational biology
01/01/2012
Mutual repression enhances the steepness and precision of gene expression boundaries. (PubMedID: 22956897) PLoS computational biology
01/01/2012
Weighted frequent gene co-expression network mining to identify genes involved in genome stability. (PubMedID: 22956898) PLoS computational biology
01/01/2012
Shrinking the metabolic solution space using experimental datasets. (PubMedID: 22956899) PLoS computational biology
01/01/2012
Quantitative predictions of binding free energy changes in drug-resistant influenza neuraminidase. (PubMedID: 22956900) PLoS computational biology
01/01/2012
External drive to inhibitory cells induces alternating episodes of high- and low-amplitude oscillations. (PubMedID: 22956901) PLoS computational biology
01/01/2012
Sub-diffraction limit localization of proteins in volumetric space using Bayesian restoration of fluorescence images from ultrathin specimens. (PubMedID: 22956902) PLoS computational biology
01/01/2012
Interplay of gene expression noise and ultrasensitive dynamics affects bacterial operon organization. (PubMedID: 22956903) PLoS computational biology
01/01/2012
Molecular dynamics simulations reveal proton transfer pathways in cytochrome C-dependent nitric oxide reductase. (PubMedID: 22956904) PLoS computational biology
01/01/2012
Correction: quantifying and analyzing the network basis of genetic complexity. (PubMedID: 22969414) PLoS computational biology
01/01/2012
Correction: ensemble models of neutrophil trafficking in severe sepsis. (PubMedID: 22969415) PLoS computational biology
01/01/2012
Human motor cortical activity is selectively phase-entrained on underlying rhythms. (PubMedID: 22969416) PLoS computational biology
01/01/2012
Dependencies among editing sites in serotonin 2C receptor mRNA. (PubMedID: 22969417) PLoS computational biology
01/01/2012
A novel computational method identifies intra- and inter-species recombination events in Staphylococcus aureus and Streptococcus pneumoniae. (PubMedID: 22969418) PLoS computational biology
01/01/2012
Criticality is an emergent property of genetic networks that exhibit evolvability. (PubMedID: 22969419) PLoS computational biology
01/01/2012
Correlated electrostatic mutations provide a reservoir of stability in HIV protease. (PubMedID: 22969420) PLoS computational biology
01/01/2012
Performance limitations of relay neurons. (PubMedID: 22973184) PLoS computational biology
01/01/2012
Predicting the extension of biomedical ontologies. (PubMedID: 23028267) PLoS computational biology
01/01/2012
Ten simple rules for online learning. (PubMedID: 23028268) PLoS computational biology
01/01/2012
An online bioinformatics curriculum. (PubMedID: 23028269) PLoS computational biology
01/01/2012
What evidence is there for the homology of protein-protein interactions? (PubMedID: 23028270) PLoS computational biology
01/01/2012
High-throughput computer method for 3D neuronal structure reconstruction from the image stack of the Drosophila brain and its applications. (PubMedID: 23028271) PLoS computational biology
01/01/2012
Evolutionary dynamics on protein bi-stability landscapes can potentially resolve adaptive conflicts. (PubMedID: 23028272) PLoS computational biology
01/01/2012
Spontaneous excitation patterns computed for axons with injury-like impairments of sodium channels and Na/K pumps. (PubMedID: 23028273) PLoS computational biology
01/01/2012
The spatial structure of stimuli shapes the timescale of correlations in population spiking activity. (PubMedID: 23028274) PLoS computational biology
01/01/2012
Inferring the structure of social contacts from demographic data in the analysis of infectious diseases spread. (PubMedID: 23028275) PLoS computational biology
01/01/2012
Speeded reaching movements around invisible obstacles. (PubMedID: 23028276) PLoS computational biology
01/01/2012
Deciphering interactions in moving animal groups. (PubMedID: 23028277) PLoS computational biology
01/01/2012
Analysis of surface protein expression reveals the growth pattern of the gram-negative outer membrane. (PubMedID: 23028278) PLoS computational biology
01/01/2012
Stress-induced impairment of a working memory task: role of spiking rate and spiking history predicted discharge. (PubMedID: 23028279) PLoS computational biology
01/01/2012
Binding of two intrinsically disordered peptides to a multi-specific protein: a combined Monte Carlo and molecular dynamics study. (PubMedID: 23028280) PLoS computational biology
01/01/2012
Structural investigation of MscL gating using experimental data and coarse grained MD simulations. (PubMedID: 23028281) PLoS computational biology
01/01/2012
Stochastic simulations suggest that HIV-1 survives close to its error threshold. (PubMedID: 23028282) PLoS computational biology
01/01/2012
Mechanism of bacterial signal transduction revealed by molecular dynamics of Tsr dimers and trimers of dimers in lipid vesicles. (PubMedID: 23028283) PLoS computational biology
01/01/2012
Determinants of brain cell metabolic phenotypes and energy substrate utilization unraveled with a modeling approach. (PubMedID: 23028284) PLoS computational biology
01/01/2012
Inferring correlation networks from genomic survey data. (PubMedID: 23028285) PLoS computational biology
01/01/2012
Modeling phenotypic metabolic adaptations of Mycobacterium tuberculosis H37Rv under hypoxia. (PubMedID: 23028286) PLoS computational biology
01/01/2012
Spike-timing dependence of structural plasticity explains cooperative synapse formation in the neocortex. (PubMedID: 23028287) PLoS computational biology
01/01/2012
Enhancing the prioritization of disease-causing genes through tissue specific protein interaction networks. (PubMedID: 23028288) PLoS computational biology
01/01/2012
Spike-based decision learning of Nash equilibria in two-player games. (PubMedID: 23028289) PLoS computational biology
01/01/2012
Convergent transmission of RNAi guide-target mismatch information across Argonaute internal allosteric network. (PubMedID: 23028290) PLoS computational biology
01/01/2012
Tissue-specific functional networks for prioritizing phenotype and disease genes. (PubMedID: 23028291) PLoS computational biology
01/01/2012
Substrate-specific reorganization of the conformational ensemble of CSK implicates novel modes of kinase function. (PubMedID: 23028292) PLoS computational biology
01/01/2012
Modeling the seasonal adaptation of circadian clocks by changes in the network structure of the suprachiasmatic nucleus. (PubMedID: 23028293) PLoS computational biology
01/01/2012
Risk-sensitivity in Bayesian sensorimotor integration. (PubMedID: 23028294) PLoS computational biology
01/01/2012
Multistationary and oscillatory modes of free radicals generation by the mitochondrial respiratory chain revealed by a bifurcation analysis. (PubMedID: 23028295) PLoS computational biology
01/01/2012
The p7 protein of hepatitis C virus forms structurally plastic, minimalist ion channels. (PubMedID: 23028296) PLoS computational biology
01/01/2012
Coupling between catalytic loop motions and enzyme global dynamics. (PubMedID: 23028297) PLoS computational biology
01/01/2012
Why open drug discovery needs four simple rules for licensing data and models. (PubMedID: 23028298) PLoS computational biology
01/01/2012
Ten simple rules to commercialize scientific research. (PubMedID: 23028299) PLoS computational biology
01/01/2012
Confidence-based somatic mutation evaluation and prioritization. (PubMedID: 23028300) PLoS computational biology
01/01/2012
The mechanistic basis of Myxococcus xanthus rippling behavior and its physiological role during predation. (PubMedID: 23028301) PLoS computational biology
01/01/2012
How entorhinal grid cells may learn multiple spatial scales from a dorsoventral gradient of cell response rates in a self-organizing map. (PubMedID: 23055909) PLoS computational biology
01/01/2012
Prediction and dissection of widely-varying association rate constants of actin-binding proteins. (PubMedID: 23055910) PLoS computational biology
01/01/2012
Ubiquitin dynamics in complexes reveal molecular recognition mechanisms beyond induced fit and conformational selection. (PubMedID: 23055911) PLoS computational biology
01/01/2012
Human cytomegalovirus clinical strain-specific microRNA miR-UL148D targets the human chemokine RANTES during infection. (PubMedID: 22412377) PLoS pathogens
01/01/2012
Structural insights into a unique Legionella pneumophila effector LidA recognizing both GDP and GTP bound Rab1 in their active state. (PubMedID: 22416225) PLoS pathogens
01/01/2012
Identification of O-mannosylated virulence factors in Ustilago maydis. (PubMedID: 22416226) PLoS pathogens
01/01/2012
New insights into Blastocystis spp.: a potential link with irritable bowel syndrome. (PubMedID: 22438803) PLoS pathogens
01/01/2012
A peptidoglycan fragment triggers ß-lactam resistance in Bacillus licheniformis. (PubMedID: 22438804) PLoS pathogens
01/01/2012
E2F1 mediated apoptosis induced by the DNA damage response is blocked by EBV nuclear antigen 3C in lymphoblastoid cells. (PubMedID: 22438805) PLoS pathogens
01/01/2012
Stage specific assessment of Candida albicans phagocytosis by macrophages identifies cell wall composition and morphogenesis as key determinants. (PubMedID: 22438806) PLoS pathogens
01/01/2012
HMOX1 gene promoter alleles and high HO-1 levels are associated with severe malaria in Gambian children. (PubMedID: 22438807) PLoS pathogens
01/01/2012
Preferential entry of botulinum neurotoxin A Hc domain through intestinal crypt cells and targeting to cholinergic neurons of the mouse intestine. (PubMedID: 22438808) PLoS pathogens
01/01/2012
Nasal Acai polysaccharides potentiate innate immunity to protect against pulmonary Francisella tularensis and Burkholderia pseudomallei Infections. (PubMedID: 22438809) PLoS pathogens
01/01/2012
The novel Candida albicans transporter Dur31 Is a multi-stage pathogenicity factor. (PubMedID: 22438810) PLoS pathogens
01/01/2012
Inflammation and disintegration of intestinal villi in an experimental model for Vibrio parahaemolyticus-induced diarrhea. (PubMedID: 22438811) PLoS pathogens
01/01/2012
TGF-ß1 down-regulation of NKG2D/DAP10 and 2B4/SAP expression on human NK cells contributes to HBV persistence. (PubMedID: 22438812) PLoS pathogens
01/01/2012
Molecular determinants of resistance activation and suppression by Phytophthora infestans effector IPI-O. (PubMedID: 22438813) PLoS pathogens
01/01/2012
Sleeping with the enemy: how intracellular pathogens cope with a macrophage lifestyle. (PubMedID: 22457616) PLoS pathogens
01/01/2012
Comparative genomics of the apicomplexan parasites Toxoplasma gondii and Neospora caninum: Coccidia differing in host range and transmission strategy. (PubMedID: 22457617) PLoS pathogens
01/01/2012
Additive function of Vibrio vulnificus MARTX(Vv) and VvhA cytolysins promotes rapid growth and epithelial tissue necrosis during intestinal infection. (PubMedID: 22457618) PLoS pathogens
01/01/2012
Dengue virus infection perturbs lipid homeostasis in infected mosquito cells. (PubMedID: 22457619) PLoS pathogens
01/01/2012
Mannose binding lectin is required for alphavirus-induced arthritis/myositis. (PubMedID: 22457620) PLoS pathogens
01/01/2012
A single nucleotide polymorphism in tetherin promotes retrovirus restriction in vivo. (PubMedID: 22457621) PLoS pathogens
01/01/2012
The core protein of classical Swine Fever virus is dispensable for virus propagation in vitro. (PubMedID: 22457622) PLoS pathogens
01/01/2012
Direct recognition of Fusobacterium nucleatum by the NK cell natural cytotoxicity receptor NKp46 aggravates periodontal disease. (PubMedID: 22457623) PLoS pathogens
01/01/2012
Peptidoglycan-modifying enzyme Pgp1 is required for helical cell shape and pathogenicity traits in Campylobacter jejuni. (PubMedID: 22457624) PLoS pathogens
01/01/2012
Multiple peptidoglycan modification networks modulate Helicobacter pylori's cell shape, motility, and colonization potential. (PubMedID: 22457625) PLoS pathogens
01/01/2012
Chemoenzymatic site-specific labeling of influenza glycoproteins as a tool to observe virus budding in real time. (PubMedID: 22457626) PLoS pathogens
01/01/2012
Inactivation of staphylococcal phenol soluble modulins by serum lipoprotein particles. (PubMedID: 22457627) PLoS pathogens
01/01/2012
Induced release of a plant-defense volatile 'deceptively' attracts insect vectors to plants infected with a bacterial pathogen. (PubMedID: 22457628) PLoS pathogens
01/01/2012
Thriving under stress: selective translation of HIV-1 structural protein mRNA during Vpr-mediated impairment of eIF4E translation activity. (PubMedID: 22457629) PLoS pathogens
01/01/2012
A foot in the door for dermatophyte research. (PubMedID: 22479177) PLoS pathogens
01/01/2012
In situ microscopy analysis reveals local innate immune response developed around Brucella infected cells in resistant and susceptible mice. (PubMedID: 22479178) PLoS pathogens
01/01/2012
Mutation and selection of prions. (PubMedID: 22479179) PLoS pathogens
01/01/2012
C. elegans germ cells show temperature and age-dependent expression of Cer1, a Gypsy/Ty3-related retrotransposon. (PubMedID: 22479180) PLoS pathogens
01/01/2012
A novel mouse model of Schistosoma haematobium egg-induced immunopathology. (PubMedID: 22479181) PLoS pathogens
01/01/2012
A cytoplasmic tail determinant in HIV-1 Vpu mediates targeting of tetherin for endosomal degradation and counteracts interferon-induced restriction. (PubMedID: 22479182) PLoS pathogens
01/01/2012
HIV-1 superinfection in women broadens and strengthens the neutralizing antibody response. (PubMedID: 22479183) PLoS pathogens
01/01/2012
Virulence regulator EspR of Mycobacterium tuberculosis is a nucleoid-associated protein. (PubMedID: 22479184) PLoS pathogens
01/01/2012
Dengue virus infection of the Aedes aegypti salivary gland and chemosensory apparatus induces genes that modulate infection and blood-feeding behavior. (PubMedID: 22479185) PLoS pathogens
01/01/2012
Shiga toxin 1 induces on lipopolysaccharide-treated astrocytes the release of tumor necrosis factor-alpha that alter brain-like endothelium integrity. (PubMedID: 22479186) PLoS pathogens
01/01/2012
Anthrax lethal factor cleavage of Nlrp1 is required for activation of the inflammasome. (PubMedID: 22479187) PLoS pathogens
01/01/2012
Calcium influx rescues adenylate cyclase-hemolysin from rapid cell membrane removal and enables phagocyte permeabilization by toxin pores. (PubMedID: 22496638) PLoS pathogens
01/01/2012
Fungal biofilms. (PubMedID: 22496639) PLoS pathogens
01/01/2012
Ross, macdonald, and a theory for the dynamics and control of mosquito-transmitted pathogens. (PubMedID: 22496640) PLoS pathogens
01/01/2012
CEACAM1 negatively regulates IL-1ß production in LPS activated neutrophils by recruiting SHP-1 to a SYK-TLR4-CEACAM1 complex. (PubMedID: 22496641) PLoS pathogens
01/01/2012
Neutrophils Promote Mycobacterial Trehalose Dimycolate-Induced Lung Inflammation via the Mincle Pathway. (PubMedID: 22496642) PLoS pathogens
01/01/2012
An "escape clock" for estimating the turnover of SIV DNA in resting CD4? T cells. (PubMedID: 22496643) PLoS pathogens
01/01/2012
Pseudomonas aeruginosa pili and flagella mediate distinct binding and signaling events at the apical and basolateral surface of airway epithelium. (PubMedID: 22496644) PLoS pathogens
01/01/2012
Productive hepatitis C virus infection of stem cell-derived hepatocytes reveals a critical transition to viral permissiveness during differentiation. (PubMedID: 22496645) PLoS pathogens
01/01/2012
Modeling of the N-glycosylated transferrin receptor suggests how transferrin binding can occur within the surface coat of Trypanosoma brucei. (PubMedID: 22496646) PLoS pathogens
01/01/2012
Disease-associated mutations disrupt functionally important regions of intrinsic protein disorder. (PubMedID: 23055912) PLoS computational biology
01/01/2012
Molecular mechanism for the dual alcohol modulation of Cys-loop receptors. (PubMedID: 23055913) PLoS computational biology
01/01/2012
Coding and decoding with adapting neurons: a population approach to the peri-stimulus time histogram. (PubMedID: 23055914) PLoS computational biology
01/01/2012
Random field model reveals structure of the protein recombinational landscape. (PubMedID: 23055915) PLoS computational biology
01/01/2012
A model of reward- and effort-based optimal decision making and motor control. (PubMedID: 23055916) PLoS computational biology
01/01/2012
Connecting macroscopic observables and microscopic assembly events in amyloid formation using coarse grained simulations. (PubMedID: 23071427) PLoS computational biology
01/01/2012
Discovering relations between mind, brain, and mental disorders using topic mapping. (PubMedID: 23071428) PLoS computational biology
01/01/2012
Analysis of slow (theta) oscillations as a potential temporal reference frame for information coding in sensory cortices. (PubMedID: 23071429) PLoS computational biology
01/01/2012
Very slow search and reach: failure to maximize expected gain in an eye-hand coordination task. (PubMedID: 23071430) PLoS computational biology
01/01/2012
Functional modules, structural topology, and optimal activity in metabolic networks. (PubMedID: 23071431) PLoS computational biology
01/01/2012
Modeling dynamic regulatory processes in stroke. (PubMedID: 23071432) PLoS computational biology
01/01/2012
MOSAIC: a multiscale model of osteogenesis and sprouting angiogenesis with lateral inhibition of endothelial cells. (PubMedID: 23071433) PLoS computational biology
01/01/2012
Multiple spike time patterns occur at bifurcation points of membrane potential dynamics. (PubMedID: 23093916) PLoS computational biology
01/01/2012
Evaluating the adequacy of gravity models as a description of human mobility for epidemic modelling. (PubMedID: 23093917) PLoS computational biology
01/01/2012
Osteoprotegerin in bone metastases: mathematical solution to the puzzle. (PubMedID: 23093918) PLoS computational biology
01/01/2012
CAVER 3.0: a tool for the analysis of transport pathways in dynamic protein structures. (PubMedID: 23093919) PLoS computational biology
01/01/2012
Probability fluxes and transition paths in a Markovian model describing complex subunit cooperativity in HCN2 channels. (PubMedID: 23093920) PLoS computational biology
01/01/2012
Spatially pooled contrast responses predict neural and perceptual similarity of naturalistic image categories. (PubMedID: 23093921) PLoS computational biology
01/01/2012
The dynamics of naturally acquired immunity to Plasmodium falciparum infection. (PubMedID: 23093922) PLoS computational biology
01/01/2012
Estimating the hidden burden of bovine tuberculosis in Great Britain. (PubMedID: 23093923) PLoS computational biology
01/01/2012
Linkers of cell polarity and cell cycle regulation in the fission yeast protein interaction network. (PubMedID: 23093924) PLoS computational biology
01/01/2012
The laminar cortex model: a new continuum cortex model incorporating laminar architecture. (PubMedID: 23093925) PLoS computational biology
01/01/2012
Regulatory network structure as a dominant determinant of transcription factor evolutionary rate. (PubMedID: 23093926) PLoS computational biology
01/01/2012
Membrane-elasticity model of Coatless vesicle budding induced by ESCRT complexes. (PubMedID: 23093927) PLoS computational biology
01/01/2012
A structural systems biology approach for quantifying the systemic consequences of missense mutations in proteins. (PubMedID: 23093928) PLoS computational biology
01/01/2012
Phasic firing in vasopressin cells: understanding its functional significance through computational models. (PubMedID: 23093929) PLoS computational biology
01/01/2012
Determining host metabolic limitations on viral replication via integrated modeling and experimental perturbation. (PubMedID: 23093930) PLoS computational biology
01/01/2012
Predictive dynamics of human pain perception. (PubMedID: 23133342) PLoS computational biology
01/01/2012
How recent history affects perception: the normative approach and its heuristic approximation. (PubMedID: 23133343) PLoS computational biology
01/01/2012
The effect of bacterial recombination on adaptation on fitness landscapes with limited peak accessibility. (PubMedID: 23133344) PLoS computational biology
01/01/2012
Next-generation sequencing of human mitochondrial reference genomes uncovers high heteroplasmy frequency. (PubMedID: 23133345) PLoS computational biology
01/01/2012
The role of social contacts and original antigenic sin in shaping the age pattern of immunity to seasonal influenza. (PubMedID: 23133346) PLoS computational biology
01/01/2012
Modeling protective anti-tumor immunity via preventative cancer vaccines using a hybrid agent-based and delay differential equation approach. (PubMedID: 23133347) PLoS computational biology
01/01/2012
Incorporating 16S gene copy number information improves estimates of microbial diversity and abundance. (PubMedID: 23133348) PLoS computational biology
01/01/2012
Evolutionary analysis of human immunodeficiency virus type 1 therapies based on conditionally replicating vectors. (PubMedID: 23133349) PLoS computational biology
01/01/2012
Emergence of the mitochondrial reticulum from fission and fusion dynamics. (PubMedID: 23133350) PLoS computational biology
01/01/2012
Integrating cellular metabolism into a multiscale whole-body model. (PubMedID: 23133351) PLoS computational biology
01/01/2012
Disease prevention versus data privacy: using landcover maps to inform spatial epidemic models. (PubMedID: 23133352) PLoS computational biology
01/01/2012
Evolution of associative learning in chemical networks. (PubMedID: 23133353) PLoS computational biology
01/01/2012
Theory on the coupled stochastic dynamics of transcription and splice-site recognition. (PubMedID: 23133354) PLoS computational biology
01/01/2012
A characterization of scale invariant responses in enzymatic networks. (PubMedID: 23133355) PLoS computational biology
01/01/2012
The role of flexibility and conformational selection in the binding promiscuity of PDZ domains. (PubMedID: 23133356) PLoS computational biology
01/01/2012
Comparative analysis of RNA families reveals distinct repertoires for each domain of life. (PubMedID: 23133357) PLoS computational biology
01/01/2012
Reconstructing the dynamics of HIV evolution within hosts from serial deep sequence data. (PubMedID: 23133358) PLoS computational biology
01/01/2012
Dynamic control of selectivity in the ubiquitination pathway revealed by an ASP to GLU substitution in an intra-molecular salt-bridge network. (PubMedID: 23133359) PLoS computational biology
01/01/2012
Determinants of translation elongation speed and ribosomal profiling biases in mouse embryonic stem cells. (PubMedID: 23133360) PLoS computational biology
01/01/2012
A mathematical model of CR3/TLR2 crosstalk in the context of Francisella tularensis infection. (PubMedID: 23133361) PLoS computational biology
01/01/2012
Impact of stoichiometry representation on simulation of genotype-phenotype relationships in metabolic networks. (PubMedID: 23133362) PLoS computational biology
01/01/2012
Music in our ears: the biological bases of musical timbre perception. (PubMedID: 23133363) PLoS computational biology
01/01/2012
pH-Dependent conformational changes in proteins and their effect on experimental pK(a)s: the case of Nitrophorin 4. (PubMedID: 23133364) PLoS computational biology
01/01/2012
Phenomenological model for predicting the catabolic potential of an arbitrary nutrient. (PubMedID: 23133365) PLoS computational biology
01/01/2012
Mesoscopic model of actin-based propulsion. (PubMedID: 23133366) PLoS computational biology
01/01/2012
Structural insights into the inhibition of actin-capping protein by interactions with phosphatidic acid and phosphatidylinositol (4,5)-bisphosphate. (PubMedID: 23133367) PLoS computational biology
01/01/2012
Coordinated optimization of visual cortical maps (I) symmetry-based analysis. (PubMedID: 23144599) PLoS computational biology
01/01/2012
A graphical modelling approach to the dissection of highly correlated transcription factor binding site profiles. (PubMedID: 23144600) PLoS computational biology
01/01/2012
Functional inference of complex anatomical tendinous networks at a macroscopic scale via sparse experimentation. (PubMedID: 23144601) PLoS computational biology
01/01/2012
Coordinated optimization of visual cortical maps (II) numerical studies. (PubMedID: 23144602) PLoS computational biology
01/01/2012
Efficient "communication through coherence" requires oscillations structured to minimize interference between signals. (PubMedID: 23144603) PLoS computational biology
01/01/2012
Ten simple rules to protect your intellectual property. (PubMedID: 23144604) PLoS computational biology
01/01/2012
Functional analysis of metabolic channeling and regulation in lignin biosynthesis: a computational approach. (PubMedID: 23144605) PLoS computational biology
01/01/2012
Stochastic modeling of expression kinetics identifies messenger half-lives and reveals sequential waves of co-ordinated transcription and decay. (PubMedID: 23144606) PLoS computational biology
01/01/2012
Distinct neurogenomic states in basal ganglia subregions relate differently to singing behavior in songbirds. (PubMedID: 23144607) PLoS computational biology
01/01/2012
Strategy diversity stabilizes mutualism through investment cycles, phase polymorphism, and spatial bubbles. (PubMedID: 23166478) PLoS computational biology
01/01/2012
This Déjà vu feeling--analysis of multidomain protein evolution in eukaryotic genomes. (PubMedID: 23166479) PLoS computational biology
01/01/2012
Chemotactic migration of T cells towards dendritic cells promotes the detection of rare antigens. (PubMedID: 23166480) PLoS computational biology
01/01/2012
A Bayesian inference framework to reconstruct transmission trees using epidemiological and genetic data. (PubMedID: 23166481) PLoS computational biology
01/01/2012
Elastic energy storage and radial forces in the myofilament lattice depend on sarcomere length. (PubMedID: 23166482) PLoS computational biology
01/01/2012
Sensorimotor learning biases choice behavior: a learning neural field model for decision making. (PubMedID: 23166483) PLoS computational biology
01/01/2012
Functional connectivity and tuning curves in populations of simultaneously recorded neurons. (PubMedID: 23166484) PLoS computational biology
01/01/2012
The dominant folding route minimizes backbone distortion in SH3. (PubMedID: 23166485) PLoS computational biology
01/01/2012
The origin of minus-end directionality and mechanochemistry of Ncd motors. (PubMedID: 23166486) PLoS computational biology
01/01/2012
The role of exposure history on HIV acquisition: insights from repeated low-dose challenge studies. (PubMedID: 23180981) PLoS computational biology
01/01/2012
Internal representations of temporal statistics and feedback calibrate motor-sensory interval timing. (PubMedID: 23209386) PLoS computational biology
01/01/2012
Molecular basis of calcium-sensitizing and desensitizing mutations of the human cardiac troponin C regulatory domain: a multi-scale simulation study. (PubMedID: 23209387) PLoS computational biology
01/01/2012
Phase resetting reveals network dynamics underlying a bacterial cell cycle. (PubMedID: 23209388) PLoS computational biology
01/01/2012
Bioinformatics for the Human Microbiome Project. (PubMedID: 23209389) PLoS computational biology
01/01/2012
Temporal expression-based analysis of metabolism. (PubMedID: 23209390) PLoS computational biology
01/01/2012
Kinetics of amyloid aggregation: a study of the GNNQQNY prion sequence. (PubMedID: 23209391) PLoS computational biology
01/01/2012
The ortholog conjecture is untestable by the current gene ontology but is supported by RNA sequencing data. (PubMedID: 23209392) PLoS computational biology
01/01/2012
Universal pacemaker of genome evolution. (PubMedID: 23209393) PLoS computational biology
01/01/2012
How random is social behaviour? Disentangling social complexity through the study of a wild house mouse population. (PubMedID: 23209394) PLoS computational biology
01/01/2012
Weakly circadian cells improve resynchrony. (PubMedID: 23209395) PLoS computational biology
01/01/2012
Reconstructing mammalian sleep dynamics with data assimilation. (PubMedID: 23209396) PLoS computational biology
01/01/2012
Simulations of long-term community dynamics in coral reefs--how perturbations shape trajectories. (PubMedID: 23209397) PLoS computational biology
01/01/2012
Experimental studies and dynamics modeling analysis of the swimming and diving of whirligig beetles (Coleoptera: Gyrinidae). (PubMedID: 23209398) PLoS computational biology
01/01/2012
Accurate prediction of the dynamical changes within the second PDZ domain of PTP1e. (PubMedID: 23209399) PLoS computational biology
01/01/2012
ACME: automated cell morphology extractor for comprehensive reconstruction of cell membranes. (PubMedID: 23236265) PLoS computational biology
01/01/2012
Sensitivity analysis of flux determination in heart by H2 ¹8O -provided labeling using a dynamic Isotopologue model of energy transfer pathways. (PubMedID: 23236266) PLoS computational biology
01/01/2012
Genomic hallmarks of genes involved in chromosomal translocations in hematological cancer. (PubMedID: 23236267) PLoS computational biology
01/01/2012
Predicting spatial and temporal gene expression using an integrative model of transcription factor occupancy and chromatin state. (PubMedID: 23236268) PLoS computational biology
01/01/2012
Ten simple rules for the open development of scientific software. (PubMedID: 23236269) PLoS computational biology
01/01/2012
SnIPRE: selection inference using a Poisson random effects model. (PubMedID: 23236270) PLoS computational biology
01/01/2012
Electron transfer interactome of cytochrome C. (PubMedID: 23236271) PLoS computational biology
01/01/2012
Quantitative dynamics of telomere bouquet formation. (PubMedID: 23236272) PLoS computational biology
01/01/2012
Molecular evolution of peptide ligands with custom-tailored characteristics for targeting of glycostructures. (PubMedID: 23271960) PLoS computational biology
01/01/2012
Tuning promoter strength through RNA polymerase binding site design in Escherichia coli. (PubMedID: 23271961) PLoS computational biology
01/01/2012
Climbing fiber burst size and olivary sub-threshold oscillations in a network setting. (PubMedID: 23271962) PLoS computational biology
01/01/2012
Localizing genes to cerebellar layers by classifying ISH images. (PubMedID: 23284274) PLoS computational biology
01/01/2012
Modelling hair follicle growth dynamics as an excitable medium. (PubMedID: 23284275) PLoS computational biology
01/01/2012
Task-dependent changes in cross-level coupling between single neurons and oscillatory activity in multiscale networks. (PubMedID: 23284276) PLoS computational biology
01/01/2012
Parameter identifiability and sensitivity analysis predict targets for enhancement of STAT1 activity in pancreatic cancer and stellate cells. (PubMedID: 23284277) PLoS computational biology
01/01/2012
The evolution of cell-to-cell communication in a sporulating bacterium. (PubMedID: 23284278) PLoS computational biology
01/01/2012
Novel modeling of combinatorial miRNA targeting identifies SNP with potential role in bone density. (PubMedID: 23284279) PLoS computational biology
01/01/2012
Phylogenetic diversity theory sheds light on the structure of microbial communities. (PubMedID: 23284280) PLoS computational biology
01/01/2012
Soft-bound synaptic plasticity increases storage capacity. (PubMedID: 23284281) PLoS computational biology
01/01/2012
3D reconstruction and standardization of the rat vibrissal cortex for precise registration of single neuron morphology. (PubMedID: 23284282) PLoS computational biology
01/01/2012
PERT: a method for expression deconvolution of human blood samples from varied microenvironmental and developmental conditions. (PubMedID: 23284283) PLoS computational biology
01/01/2012
Nucleoid-associated proteins affect mutation dynamics in E. coli in a growth phase-specific manner. (PubMedID: 23284284) PLoS computational biology
01/01/2012
Teaching the fundamentals of biological data integration using classroom games. (PubMedID: 23300402) PLoS computational biology
01/01/2012
A comparison of computational models for eukaryotic cell shape and motility. (PubMedID: 23300403) PLoS computational biology
01/01/2012
Introduction to translational bioinformatics collection. (PubMedID: 23300404) PLoS computational biology
01/01/2012
Chapter 3: Small molecules and disease. (PubMedID: 23300405) PLoS computational biology
01/01/2012
Chapter 12: Human microbiome analysis. (PubMedID: 23300406) PLoS computational biology
01/01/2012
Mechanics of undulatory swimming in a frictional fluid. (PubMedID: 23300407) PLoS computational biology
01/01/2012
Chapter 2: Data-driven view of disease biology. (PubMedID: 23300408) PLoS computational biology
01/01/2012
Chapter 7: Pharmacogenomics. (PubMedID: 23300409) PLoS computational biology
01/01/2012
Chapter 4: Protein interactions and disease. (PubMedID: 23300410) PLoS computational biology
01/01/2012
Chapter 5: Network biology approach to complex diseases. (PubMedID: 23300411) PLoS computational biology
01/01/2012
Chapter 6: Structural variation and medical genomics. (PubMedID: 23300412) PLoS computational biology
01/01/2012
Chapter 11: Genome-wide association studies. (PubMedID: 23300413) PLoS computational biology
01/01/2012
Chapter 13: Mining electronic health records in the genomics era. (PubMedID: 23300414) PLoS computational biology
01/01/2012
Chapter 14: Cancer genome analysis. (PubMedID: 23300415) PLoS computational biology
01/01/2012
Chapter 1: Biomedical knowledge integration. (PubMedID: 23300416) PLoS computational biology
01/01/2012
Chapter 9: Analyses using disease ontologies. (PubMedID: 23300417) PLoS computational biology
01/01/2012
Chapter 10: Mining genome-wide genetic markers. (PubMedID: 23300418) PLoS computational biology
01/01/2012
Reliable B cell epitope predictions: impacts of method development and improved benchmarking. (PubMedID: 23300419) PLoS computational biology
01/01/2012
Phylodynamic inference and model assessment with approximate bayesian computation: influenza as a case study. (PubMedID: 23300420) PLoS computational biology
01/01/2012
A universal trend among proteomes indicates an oily last common ancestor. (PubMedID: 23300421) PLoS computational biology
01/01/2012
The two sides of complement C3d: evolution of electrostatics in a link between innate and adaptive immunity. (PubMedID: 23300422) PLoS computational biology
01/01/2012
Computational phenotyping of two-person interactions reveals differential neural response to depth-of-thought. (PubMedID: 23300423) PLoS computational biology
01/01/2012
Molecular mechanism of allosteric communication in Hsp70 revealed by molecular dynamics simulations. (PubMedID: 23300424) PLoS computational biology
01/01/2012
Using molecular mechanics to predict bulk material properties of fibronectin fibers. (PubMedID: 23300425) PLoS computational biology
01/01/2012
Calcium wave propagation in networks of endothelial cells: model-based theoretical and experimental study. (PubMedID: 23300426) PLoS computational biology
01/01/2012
Interconnected cavernous structure of bacterial fruiting bodies. (PubMedID: 23300427) PLoS computational biology
01/01/2012
What is the role of motif D in the nucleotide incorporation catalyzed by the RNA-dependent RNA polymerase from poliovirus? (PubMedID: 23300428) PLoS computational biology
01/01/2012
Chapter 8: Biological knowledge assembly and interpretation. (PubMedID: 23300429) PLoS computational biology
01/01/2012
Diffusion-weighted imaging with relative signal intensity statistical thresholding for delineating prostate cancer tumors. (PubMedID: 22450381) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Whole-heart 3D late gadolinium-enhanced MR imaging: investigation of optimal scan parameters and clinical usefulness. (PubMedID: 22450382) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Effective performance of T(1)-weighted FLAIR Imaging with BLADE in pediatric brains. (PubMedID: 22450383) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Effects of image distortion correction on voxel-based morphometry. (PubMedID: 22450384) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Ytterbium-based PARACEST agent: feasibility of CEST imaging on a clinical MR scanner. (PubMedID: 22450385) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Visualization of endolymphatic hydrops in Ménière's disease after single-dose intravenous gadolinium-based contrast medium: timing of optimal enhancement. (PubMedID: 22450386) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Evaluation of concanavalin A-induced acute liver injury in rats using an empirical mathematical model and dynamic contrast-enhanced MR imaging with Gd-EOB-DTPA. (PubMedID: 22450387) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Central high signal in inflammatory swollen lymph nodes on SPIO-enhanced interstitial MR lymphograms: a mimic of lymph node metastasis. (PubMedID: 22450388) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
MR imaging of focal medullary sponge kidney: case report. (PubMedID: 22450389) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Diffusion-weighted imaging of a malignant brenner tumor. (PubMedID: 22450390) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
CT versus MR imaging of hepatocellular carcinoma: toward improved treatment decisions. (PubMedID: 22790293) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Hepatosplenic and muscular sarcoidosis: characterization with MR imaging. (PubMedID: 22790294) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Reduction of ringing artifacts in the arterial phase of gadoxetic acid-enhanced dynamic MR imaging. (PubMedID: 22790295) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Interstitial MR lymphography in mice: comparative study with gadofluorine 8, gadofluorine M, and gadofluorine P. (PubMedID: 22790296) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Mapping of cerebral metabolic rate of oxygen using DSC and BOLD MR imaging: a preliminary study. (PubMedID: 22790297) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Ovarian masses: MR imaging with T1-weighted 3-dimensional gradient-echo IDEAL water-fat separation sequence at 3T. (PubMedID: 22790298) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Investigation of the asymmetric distributions of RF transmission and reception fields at high static field. (PubMedID: 22790299) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Walker-Warburg syndrome: demonstration of cerebellar cysts with CISS sequence. (PubMedID: 22790300) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Reversible distension of the subarachnoid space around the optic nerves in a case of idiopathic hypertrophic pachymeningitis. (PubMedID: 22790301) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Imaging of endolymphatic and perilymphatic fluid after intravenous administration of single-dose gadodiamide. (PubMedID: 22790302) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Diffusion/perfusion MR imaging of the liver: practice, challenges, and future. (PubMedID: 23037559) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
MR characterization of focal nodular hyperplasia: gadoxetic acid versus superparamagnetic iron oxide imaging. (PubMedID: 23037560) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Visualization of ovarian tumors using 3T MR imaging: diagnostic effectiveness and difficulties. (PubMedID: 23037561) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Diffusion fractional anisotropy-based transformation in skeletal muscle caused by pressure. (PubMedID: 23037562) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Diffusion- and T2-weighted MR imaging of the liver: effect of intravenous administration of gadoxetic acid disodium. (PubMedID: 23037563) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Experimental demonstration of the proportionality of the RF reception field to a complex conjugate of B1?. (PubMedID: 23037564) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Spinal subdural hematoma mimicking epidural lipomatosis. (PubMedID: 23037565) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
MR imaging of polypoid endometriosis of the ovary. (PubMedID: 23037566) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Clinical value of 3D T2*-weighted imaging with multi-echo acquisition: comparison with conventional 2D T2*-weighted imaging and 3D phase-sensitive MR imaging. (PubMedID: 23037567) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Imaging of Ménière's disease after intravenous administration of single-dose gadodiamide: utility of subtraction images with different inversion time. (PubMedID: 23037568) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Visualizing non-Gaussian diffusion: clinical application of q-space imaging and diffusional kurtosis imaging of the brain and spine. (PubMedID: 23269009) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Highly resolved two-dimensional ¹H spectroscopy of the human brain using ISIS CT-PRESS with resolution enhancement. (PubMedID: 23269010) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Compressed sensing in magnetic resonance imaging using the multi-step Fresnel domain band split transformation. (PubMedID: 23269011) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
A survey analysis of acoustic trauma related to MR scans. (PubMedID: 23269012) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
In vivo measurement of longitudinal relaxation time of human blood by inversion-recovery fast gradient-echo MR imaging at 3T. (PubMedID: 23269013) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
A technique to reduce motion artifact for externally triggered cine-MRI(EC-MRI) based on detecting the onset of the articulated word with spectral analysis. (PubMedID: 23269014) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Reduction in the vascular bed volume of uterine fibroids after hormonal treatment: evaluation with dynamic double-echo R2* imaging. (PubMedID: 23269015) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Magnetic resonance elastography for staging liver fibrosis in chronic hepatitis C. (PubMedID: 23269016) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Hypertrophic olivary degeneration after gamma-knife radiosurgery for pontine metastasis. (PubMedID: 23269017) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Imaging of Ménière's disease by subtraction of MR cisternography from positive perilymph image. (PubMedID: 23269018) Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine
01/01/2012
Zebrafish: a see-through host and a fluorescent toolbox to probe host-pathogen interaction. (PubMedID: 22241986) PLoS pathogens
01/01/2012
Type 1 interferons and antiviral CD8 T-cell responses. (PubMedID: 22241987) PLoS pathogens
01/01/2012
Lymphoid tissue damage in HIV-1 infection depletes naïve T cells and limits T cell reconstitution after antiretroviral therapy. (PubMedID: 22241988) PLoS pathogens
01/01/2012
Legionella pneumophila secretes a mitochondrial carrier protein during infection. (PubMedID: 22241989) PLoS pathogens
01/01/2012
Slit2/Robo4 signaling modulates HIV-1 gp120-induced lymphatic hyperpermeability. (PubMedID: 22241990) PLoS pathogens
01/01/2012
Replication in cells of hematopoietic origin is necessary for Dengue virus dissemination. (PubMedID: 22241991) PLoS pathogens
01/01/2012
Molecular determinants and dynamics of hepatitis C virus secretion. (PubMedID: 22241992) PLoS pathogens
01/01/2012
The cysteine rich necrotrophic effector SnTox1 produced by Stagonospora nodorum triggers susceptibility of wheat lines harboring Snn1. (PubMedID: 22241993) PLoS pathogens
01/01/2012
Human subtilase SKI-1/S1P is a master regulator of the HCV Lifecycle and a potential host cell target for developing indirect-acting antiviral agents. (PubMedID: 22241994) PLoS pathogens
01/01/2012
Production of virus-derived ping-pong-dependent piRNA-like small RNAs in the mosquito soma. (PubMedID: 22241995) PLoS pathogens
01/01/2012
(Homo)glutathione deficiency impairs root-knot nematode development in Medicago truncatula. (PubMedID: 22241996) PLoS pathogens
01/01/2012
Insights into minor group rhinovirus uncoating: the X-ray structure of the HRV2 empty capsid. (PubMedID: 22241997) PLoS pathogens
01/01/2012
Trypanosoma cruzi trans-sialidase in complex with a neutralizing antibody: structure/function studies towards the rational design of inhibitors. (PubMedID: 22241998) PLoS pathogens
01/01/2012
Antibody inhibition of a viral type 1 interferon decoy receptor cures a viral disease by restoring interferon signaling in the liver. (PubMedID: 22241999) PLoS pathogens
01/01/2012
The Vibrio cholerae colonization factor GbpA possesses a modular structure that governs binding to different host surfaces. (PubMedID: 22253590) PLoS pathogens
01/01/2012
Sequence divergent RXLR effectors share a structural fold conserved across plant pathogenic oomycete species. (PubMedID: 22253591) PLoS pathogens
01/01/2012
Two distinct coagulase-dependent barriers protect Staphylococcus aureus from neutrophils in a three dimensional in vitro infection model. (PubMedID: 22253592) PLoS pathogens
01/01/2012
The circadian clock protein timeless regulates phagocytosis of bacteria in Drosophila. (PubMedID: 22253593) PLoS pathogens
01/01/2012
Nonsex genes in the mating type locus of Candida albicans play roles in a/a biofilm formation, including impermeability and fluconazole resistance. (PubMedID: 22253594) PLoS pathogens
01/01/2012
The RBP-J? binding sites within the RTA promoter regulate KSHV latent infection and cell proliferation. (PubMedID: 22253595) PLoS pathogens
01/01/2012
Mechanisms of NK cell-macrophage Bacillus anthracis crosstalk: a balance between stimulation by spores and differential disruption by toxins. (PubMedID: 22253596) PLoS pathogens
01/01/2012
The bZIP transcription factor Rca1p is a central regulator of a novel CO2 sensing pathway in yeast. (PubMedID: 22253597) PLoS pathogens
01/01/2012
Human Herpesvirus 8 (HHV8) sequentially shapes the NK cell repertoire during the course of asymptomatic infection and Kaposi sarcoma. (PubMedID: 22253598) PLoS pathogens
01/01/2012
Two-drug antimicrobial chemotherapy: a mathematical model and experiments with Mycobacterium marinum. (PubMedID: 22253599) PLoS pathogens
01/01/2012
How "humane" is your endpoint? Refining the science-driven approach for termination of animal studies of chronic infection. (PubMedID: 22275862) PLoS pathogens
01/01/2012
Sexual development in Plasmodium: lessons from functional analyses. (PubMedID: 22275863) PLoS pathogens
01/01/2012
Progressive visceral leishmaniasis is driven by dominant parasite-induced STAT6 activation and STAT6-dependent host arginase 1 expression. (PubMedID: 22275864) PLoS pathogens
01/01/2012
Two genetic determinants acquired late in mus evolution regulate the inclusion of exon 5, which alters mouse APOBEC3 translation efficiency. (PubMedID: 22275865) PLoS pathogens
01/01/2012
Impaired chromatin remodelling at STAT1-regulated promoters leads to global unresponsiveness of Toxoplasma gondii-Infected macrophages to IFN-?. (PubMedID: 22275866) PLoS pathogens
01/01/2012
Human-like PB2 627K influenza virus polymerase activity is regulated by importin-a1 and -a7. (PubMedID: 22275867) PLoS pathogens
01/01/2012
Development of functional and molecular correlates of vaccine-induced protection for a model intracellular pathogen, F. tularensis LVS. (PubMedID: 22275868) PLoS pathogens
01/01/2012
Temporal expression of bacterial proteins instructs host CD4 T cell expansion and Th17 development. (PubMedID: 22275869) PLoS pathogens
01/01/2012
How do bacteria know they are on a surface and regulate their response to an adhering state? (PubMedID: 22291589) PLoS pathogens
01/01/2012
Systems biology approaches reveal a specific interferon-inducible signature in HTLV-1 associated myelopathy. (PubMedID: 22291590) PLoS pathogens
01/01/2012
Historical contingencies modulate the adaptability of Rice yellow mottle virus. (PubMedID: 22291591) PLoS pathogens
01/01/2012
The viral and cellular microRNA targetome in lymphoblastoid cell lines. (PubMedID: 22291592) PLoS pathogens
01/01/2012
IL-10R blockade during chronic schistosomiasis mansoni results in the loss of B cells from the liver and the development of severe pulmonary disease. (PubMedID: 22291593) PLoS pathogens
01/01/2012
The murine coronavirus hemagglutinin-esterase receptor-binding site: a major shift in ligand specificity through modest changes in architecture. (PubMedID: 22291594) PLoS pathogens
01/01/2012
The intracellular DNA sensor IFI16 gene acts as restriction factor for human cytomegalovirus replication. (PubMedID: 22291595) PLoS pathogens
01/01/2012
The bacterial cytoskeleton modulates motility, type 3 secretion, and colonization in Salmonella. (PubMedID: 22291596) PLoS pathogens
01/01/2012
HCMV targets the metabolic stress response through activation of AMPK whose activity is important for viral replication. (PubMedID: 22291597) PLoS pathogens
01/01/2012
Identification and in vitro analysis of the GatD/MurT enzyme-complex catalyzing lipid II amidation in Staphylococcus aureus. (PubMedID: 22291598) PLoS pathogens
01/01/2012
Identification of genetic determinants and enzymes involved with the amidation of glutamic acid residues in the peptidoglycan of Staphylococcus aureus. (PubMedID: 22303291) PLoS pathogens
01/01/2012
Indifferent, affectionate, or deceitful: lifestyles and secretomes of fungi. (PubMedID: 22396640) PLoS pathogens
01/01/2012
Phosphorylcholine allows for evasion of bactericidal antibody by Haemophilus influenzae. (PubMedID: 22396641) PLoS pathogens
01/01/2012
An entomopathogenic nematode by any other name. (PubMedID: 22396642) PLoS pathogens
01/01/2012
PK-sensitive PrP is infectious and shares basic structural features with PK-resistant PrP. (PubMedID: 22396643) PLoS pathogens
01/01/2012
Fungal-induced cell cycle impairment, chromosome instability and apoptosis via differential activation of NF-?B. (PubMedID: 22396644) PLoS pathogens
01/01/2012
Critical role of perforin-dependent CD8+ T cell immunity for rapid protective vaccination in a murine model for human smallpox. (PubMedID: 22396645) PLoS pathogens
01/01/2012
LEDGF/p75-independent HIV-1 replication demonstrates a role for HRP-2 and remains sensitive to inhibition by LEDGINs. (PubMedID: 22396646) PLoS pathogens
01/01/2012
Redundant Notch1 and Notch2 signaling is necessary for IFN? secretion by T helper 1 cells during infection with Leishmania major. (PubMedID: 22396647) PLoS pathogens
01/01/2012
Visualization and measurement of ATP levels in living cells replicating hepatitis C virus genome RNA. (PubMedID: 22396648) PLoS pathogens
01/01/2012
Kaposi's sarcoma herpesvirus upregulates Aurora A expression to promote p53 phosphorylation and ubiquitylation. (PubMedID: 22396649) PLoS pathogens
01/01/2012
Short ORF-dependent ribosome shunting operates in an RNA picorna-like virus and a DNA pararetrovirus that cause rice tungro disease. (PubMedID: 22396650) PLoS pathogens
01/01/2012
Influenza virus respiratory infection and transmission following ocular inoculation in ferrets. (PubMedID: 22396651) PLoS pathogens
01/01/2012
A20 (Tnfaip3) deficiency in myeloid cells protects against influenza A virus infection. (PubMedID: 22396652) PLoS pathogens
01/01/2012
Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection. (PubMedID: 22412369) PLoS pathogens
01/01/2012
Taste for blood: hemoglobin as a nutrient source for pathogens. (PubMedID: 22412370) PLoS pathogens
01/01/2012
Differential function of lip residues in the mechanism and biology of an anthrax hemophore. (PubMedID: 22412371) PLoS pathogens
01/01/2012
Quantitative Proteomics of Intracellular Campylobacter jejuni Reveals Metabolic Reprogramming. (PubMedID: 22412372) PLoS pathogens
01/01/2012
Significant association of KIR2DL3-HLA-C1 combination with cerebral malaria and implications for co-evolution of KIR and HLA. (PubMedID: 22412373) PLoS pathogens
01/01/2012
Influenza A virus infection of human primary dendritic cells impairs their ability to cross-present antigen to CD8 T cells. (PubMedID: 22412374) PLoS pathogens
01/01/2012
Capsule type of Streptococcus pneumoniae determines growth phenotype. (PubMedID: 22412375) PLoS pathogens
01/01/2012
Metabolism of phosphatidylinositol 4-kinase IIIa-dependent PI4P Is subverted by HCV and is targeted by a 4-anilino quinazoline with antiviral activity. (PubMedID: 22412376) PLoS pathogens
01/01/2012
Induction of strain-transcending antibodies against Group A PfEMP1 surface antigens from virulent malaria parasites. (PubMedID: 22532802) PLoS pathogens
01/01/2012
Loss of anti-viral immunity by infection with a virus encoding a cross-reactive pathogenic epitope. (PubMedID: 22536152) PLoS pathogens
01/01/2012
CLEC5A regulates Japanese encephalitis virus-induced neuroinflammation and lethality. (PubMedID: 22536153) PLoS pathogens
01/01/2012
Entry of human papillomavirus type 16 by actin-dependent, clathrin- and lipid raft-independent endocytosis. (PubMedID: 22536154) PLoS pathogens
01/01/2012
Proteolytic processing of Nlrp1b is required for inflammasome activity. (PubMedID: 22536155) PLoS pathogens
01/01/2012
Epstein-Barr virus LMP2A reduces hyperactivation induced by LMP1 to restore normal B cell phenotype in transgenic mice. (PubMedID: 22536156) PLoS pathogens
01/01/2012
A GATA transcription factor recruits Hda1 in response to reduced Tor1 signaling to establish a hyphal chromatin state in Candida albicans. (PubMedID: 22536157) PLoS pathogens
01/01/2012
T regulatory cells control susceptibility to invasive pneumococcal pneumonia in mice. (PubMedID: 22563306) PLoS pathogens
01/01/2012
The accessory genome as a cradle for adaptive evolution in pathogens. (PubMedID: 22570606) PLoS pathogens
01/01/2012
Macrophage activation associated with chronic murine cytomegalovirus infection results in more severe experimental choroidal neovascularization. (PubMedID: 22570607) PLoS pathogens
01/01/2012
Five questions on prion diseases. (PubMedID: 22570608) PLoS pathogens
01/01/2012
A new evolutionary model for hepatitis C virus chronic infection. (PubMedID: 22570609) PLoS pathogens
01/01/2012
Evolutionary reconstructions of the transferrin receptor of Caniforms supports canine parvovirus being a re-emerged and not a novel pathogen in dogs. (PubMedID: 22570610) PLoS pathogens
01/01/2012
The lipopolysaccharide from Capnocytophaga canimorsus reveals an unexpected role of the core-oligosaccharide in MD-2 binding. (PubMedID: 22570611) PLoS pathogens
01/01/2012
Age-dependent TLR3 expression of the intestinal epithelium contributes to rotavirus susceptibility. (PubMedID: 22570612) PLoS pathogens
01/01/2012
A single polar residue and distinct membrane topologies impact the function of the infectious bronchitis coronavirus E protein. (PubMedID: 22570613) PLoS pathogens
01/01/2012
From molecular genetics to phylodynamics: evolutionary relevance of mutation rates across viruses. (PubMedID: 22570614) PLoS pathogens
01/01/2012
The role of mast cells in the defence against pathogens. (PubMedID: 22577358) PLoS pathogens
01/01/2012
IL-17RA signaling reduces inflammation and mortality during Trypanosoma cruzi infection by recruiting suppressive IL-10-producing neutrophils. (PubMedID: 22577359) PLoS pathogens
01/01/2012
A novel small molecule inhibitor of influenza A viruses that targets polymerase function and indirectly induces interferon. (PubMedID: 22577360) PLoS pathogens
01/01/2012
A role for SKN-1/Nrf in pathogen resistance and immunosenescence in Caenorhabditis elegans. (PubMedID: 22577361) PLoS pathogens
01/01/2012
Reversing the resistance phenotype of the Biomphalaria glabrata snail host Schistosoma mansoni infection by temperature modulation. (PubMedID: 22577362) PLoS pathogens
01/01/2012
Vaccines against tuberculosis: where are we and where do we need to go? (PubMedID: 22589713) PLoS pathogens
01/01/2012
Type III secretion in Yersinia: injectisome or not? (PubMedID: 22589714) PLoS pathogens
01/01/2012
The lipopolysaccharide core of Brucella abortus acts as a shield against innate immunity recognition. (PubMedID: 22589715) PLoS pathogens
01/01/2012
Entry of herpes simplex virus type 1 (HSV-1) into the distal axons of trigeminal neurons favors the onset of nonproductive, silent infection. (PubMedID: 22589716) PLoS pathogens
01/01/2012
KSHV PAN RNA associates with demethylases UTX and JMJD3 to activate lytic replication through a physical interaction with the virus genome. (PubMedID: 22589717) PLoS pathogens
01/01/2012
The NDR/LATS kinase Cbk1 controls the activity of the transcriptional regulator Bcr1 during biofilm formation in Candida albicans. (PubMedID: 22589718) PLoS pathogens
01/01/2012
The Ustilago maydis effector Pep1 suppresses plant immunity by inhibition of host peroxidase activity. (PubMedID: 22589719) PLoS pathogens
01/01/2012
The effect of human factor H on immunogenicity of meningococcal native outer membrane vesicle vaccines with over-expressed factor H binding protein. (PubMedID: 22589720) PLoS pathogens
01/01/2012
Vitamin D inhibits human immunodeficiency virus type 1 and Mycobacterium tuberculosis infection in macrophages through the induction of autophagy. (PubMedID: 22589721) PLoS pathogens
01/01/2012
Epstein-Barr virus-encoded LMP1 interacts with FGD4 to activate Cdc42 and thereby promote migration of nasopharyngeal carcinoma cells. (PubMedID: 22589722) PLoS pathogens
01/01/2012
Nitazoxanide stimulates autophagy and inhibits mTORC1 signaling and intracellular proliferation of Mycobacterium tuberculosis. (PubMedID: 22589723) PLoS pathogens
01/01/2012
Age of the association between Helicobacter pylori and man. (PubMedID: 22589724) PLoS pathogens
01/01/2012
Synchronized retrovirus fusion in cells expressing alternative receptor isoforms releases the viral core into distinct sub-cellular compartments. (PubMedID: 22589725) PLoS pathogens
01/01/2012
Epstein-Barr virus infection of naïve B cells in vitro frequently selects clones with mutated immunoglobulin genotypes: implications for virus biology. (PubMedID: 22589726) PLoS pathogens
01/01/2012
2'-O methylation of the viral mRNA cap by West Nile virus evades ifit1-dependent and -independent mechanisms of host restriction in vivo. (PubMedID: 22589727) PLoS pathogens
01/01/2012
Negative selection by an endogenous retrovirus promotes a higher-avidity CD4+ T cell response to retroviral infection. (PubMedID: 22589728) PLoS pathogens
01/01/2012
Large-scale gene disruption in Magnaporthe oryzae identifies MC69, a secreted protein required for infection by monocot and dicot fungal pathogens. (PubMedID: 22589729) PLoS pathogens
01/01/2012
Lysogeny with Shiga toxin 2-encoding bacteriophages represses type III secretion in enterohemorrhagic Escherichia coli. (PubMedID: 22615557) PLoS pathogens
01/01/2012
Influence of microbiota on viral infections. (PubMedID: 22615558) PLoS pathogens
01/01/2012
Pdl1 is a putative lipase that enhances Photorhabdus toxin complex secretion. (PubMedID: 22615559) PLoS pathogens
01/01/2012
ATG5 is essential for ATG8-dependent autophagy and mitochondrial homeostasis in Leishmania major. (PubMedID: 22615560) PLoS pathogens
01/01/2012
Pathogen-induced proapoptotic phenotype and high CD95 (Fas) expression accompany a suboptimal CD8+ T-cell response: reversal by adenoviral vaccine. (PubMedID: 22615561) PLoS pathogens
01/01/2012
miR-27b targets KSRP to coordinate TLR4-mediated epithelial defense against Cryptosporidium parvum infection. (PubMedID: 22615562) PLoS pathogens
01/01/2012
The ubiquitin/proteasome system mediates entry and endosomal trafficking of Kaposi's sarcoma-associated herpesvirus in endothelial cells. (PubMedID: 22615563) PLoS pathogens
01/01/2012
The EBV immunoevasins vIL-10 and BNLF2a protect newly infected B cells from immune recognition and elimination. (PubMedID: 22615564) PLoS pathogens
01/01/2012
Immunogenetic mechanisms driving norovirus GII.4 antigenic variation. (PubMedID: 22615565) PLoS pathogens
01/01/2012
Plasticity of the ß-trefoil protein fold in the recognition and control of invertebrate predators and parasites by a fungal defence system. (PubMedID: 22615566) PLoS pathogens
01/01/2012
Functional analysis of NopM, a novel E3 ubiquitin ligase (NEL) domain effector of Rhizobium sp. strain NGR234. (PubMedID: 22615567) PLoS pathogens
01/01/2012
Induction of GADD34 is necessary for dsRNA-dependent interferon-ß production and participates in the control of Chikungunya virus infection. (PubMedID: 22615568) PLoS pathogens
01/01/2012
CD200 receptor controls sex-specific TLR7 responses to viral infection. (PubMedID: 22615569) PLoS pathogens
01/01/2012
Interferon-induced Ifit2/ISG54 protects mice from lethal VSV neuropathogenesis. (PubMedID: 22615570) PLoS pathogens
01/01/2012
Extracellular superoxide dismutase protects Histoplasma yeast cells from host-derived oxidative stress. (PubMedID: 22615571) PLoS pathogens
01/01/2012
Gammaherpesvirus latency accentuates EAE pathogenesis: relevance to Epstein-Barr virus and multiple sclerosis. (PubMedID: 22615572) PLoS pathogens
01/01/2012
Identification and functional analysis of the S-layer protein SplA of Paenibacillus larvae, the causative agent of American Foulbrood of honey bees. (PubMedID: 22615573) PLoS pathogens
01/01/2012
Global analysis of the evolution and mechanism of echinocandin resistance in Candida glabrata. (PubMedID: 22615574) PLoS pathogens
01/01/2012
Rates of viral evolution are linked to host geography in bat rabies. (PubMedID: 22615575) PLoS pathogens
01/01/2012
cAMP and EPAC are key players in the regulation of the signal transduction pathway involved in the a-hemolysin autophagic response. (PubMedID: 22654658) PLoS pathogens
01/01/2012
Comparative genomics reveals two novel RNAi factors in Trypanosoma brucei and provides insight into the core machinery. (PubMedID: 22654659) PLoS pathogens
01/01/2012
In vitro and in vivo isolation and characterization of Duvenhage virus. (PubMedID: 22654660) PLoS pathogens
01/01/2012
The [Het-s] prion, an amyloid fold as a cell death activation trigger. (PubMedID: 22654661) PLoS pathogens
01/01/2012
Analysis of functional differences between hepatitis C virus NS5A of genotypes 1-7 in infectious cell culture systems. (PubMedID: 22654662) PLoS pathogens
01/01/2012
Chitohexaose activates macrophages by alternate pathway through TLR4 and blocks endotoxemia. (PubMedID: 22654663) PLoS pathogens
01/01/2012
Cellular levels and binding of c-di-GMP control subcellular localization and activity of the Vibrio cholerae transcriptional regulator VpsT. (PubMedID: 22654664) PLoS pathogens
01/01/2012
Polydnavirus Ank proteins bind NF-?B homodimers and inhibit processing of Relish. (PubMedID: 22654665) PLoS pathogens
01/01/2012
Hsp90 interacts specifically with viral RNA and differentially regulates replication initiation of Bamboo mosaic virus and associated satellite RNA. (PubMedID: 22654666) PLoS pathogens
01/01/2012
Structure and functional analysis of the RNA- and viral phosphoprotein-binding domain of respiratory syncytial virus M2-1 protein. (PubMedID: 22675274) PLoS pathogens
01/01/2012
Protecting against pneumococcal disease: critical interactions between probiotics and the airway microbiome. (PubMedID: 22685396) PLoS pathogens
01/01/2012
Pathogen-mediated proteolysis of the cell death regulator RIPK1 and the host defense modulator RIPK2 in human aortic endothelial cells. (PubMedID: 22685397) PLoS pathogens
01/01/2012
Secretion of Clostridium difficile toxins A and B requires the holin-like protein TcdE. (PubMedID: 22685398) PLoS pathogens
01/01/2012
Cytomegalovirus replicon-based regulation of gene expression in vitro and in vivo. (PubMedID: 22685399) PLoS pathogens
01/01/2012
Evolution of Salmonella enterica virulence via point mutations in the fimbrial adhesin. (PubMedID: 22685400) PLoS pathogens
01/01/2012
Anopheles Imd pathway factors and effectors in infection intensity-dependent anti-Plasmodium action. (PubMedID: 22685401) PLoS pathogens
01/01/2012
3D reconstruction of VZV infected cell nuclei and PML nuclear cages by serial section array scanning electron microscopy and electron tomography. (PubMedID: 22685402) PLoS pathogens
01/01/2012
Functional amyloids composed of phenol soluble modulins stabilize Staphylococcus aureus biofilms. (PubMedID: 22685403) PLoS pathogens
01/01/2012
Propagation of RML prions in mice expressing PrP devoid of GPI anchor leads to formation of a novel, stable prion strain. (PubMedID: 22685404) PLoS pathogens
01/01/2012
Human herpesvirus 8 interferon regulatory factor-mediated BH3-only protein inhibition via Bid BH3-B mimicry. (PubMedID: 22685405) PLoS pathogens
01/01/2012
Circulating microbial products and acute phase proteins as markers of pathogenesis in lymphatic filarial disease. (PubMedID: 22685406) PLoS pathogens
01/01/2012
Molecular and electrophysiological characterization of a novel cation channel of Trypanosoma cruzi. (PubMedID: 22685407) PLoS pathogens
01/01/2012
Structure-function analysis of barley NLR immune receptor MLA10 reveals its cell compartment specific activity in cell death and disease resistance. (PubMedID: 22685408) PLoS pathogens
01/01/2012
Identification of a general O-linked protein glycosylation system in Acinetobacter baumannii and its role in virulence and biofilm formation. (PubMedID: 22685409) PLoS pathogens
01/01/2012
Mobilization of HIV spread by diaphanous 2 dependent filopodia in infected dendritic cells. (PubMedID: 22685410) PLoS pathogens
01/01/2012
Transmitted/founder and chronic subtype C HIV-1 use CD4 and CCR5 receptors with equal efficiency and are not inhibited by blocking the integrin a4ß7. (PubMedID: 22693444) PLoS pathogens
01/01/2012
Hydrophobins--unique fungal proteins. (PubMedID: 22693445) PLoS pathogens
01/01/2012
Probiotic Bifidobacterium breve induces IL-10-producing Tr1 cells in the colon. (PubMedID: 22693446) PLoS pathogens
01/01/2012
Early low-titer neutralizing antibodies impede HIV-1 replication and select for virus escape. (PubMedID: 22693447) PLoS pathogens
01/01/2012
The Wor1-like protein Fgp1 regulates pathogenicity, toxin synthesis and reproduction in the phytopathogenic fungus Fusarium graminearum. (PubMedID: 22693448) PLoS pathogens
01/01/2012
Evolution of an Eurasian avian-like influenza virus in naïve and vaccinated pigs. (PubMedID: 22693449) PLoS pathogens
01/01/2012
Experimental evolution of Legionella pneumophila in mouse macrophages leads to strains with altered determinants of environmental survival. (PubMedID: 22693450) PLoS pathogens
01/01/2012
Midgut microbiota of the malaria mosquito vector Anopheles gambiae and interactions with Plasmodium falciparum infection. (PubMedID: 22693451) PLoS pathogens
01/01/2012
Manipulation of costimulatory molecules by intracellular pathogens: veni, vidi, vici!! (PubMedID: 22719245) PLoS pathogens
01/01/2012
Synergistic parasite-pathogen interactions mediated by host immunity can drive the collapse of honeybee colonies. (PubMedID: 22719246) PLoS pathogens
01/01/2012
DNase Sda1 allows invasive M1T1 Group A Streptococcus to prevent TLR9-dependent recognition. (PubMedID: 22719247) PLoS pathogens
01/01/2012
HIV-specific antibodies capable of ADCC are common in breastmilk and are associated with reduced risk of transmission in women with high viral loads. (PubMedID: 22719248) PLoS pathogens
01/01/2012
The Salmonella deubiquitinase SseL inhibits selective autophagy of cytosolic aggregates. (PubMedID: 22719249) PLoS pathogens
01/01/2012
A high-resolution view of genome-wide pneumococcal transformation. (PubMedID: 22719250) PLoS pathogens
01/01/2012
Crystal structures reveal the multi-ligand binding mechanism of Staphylococcus aureus ClfB. (PubMedID: 22719251) PLoS pathogens
01/01/2012
African swine fever virus uses macropinocytosis to enter host cells. (PubMedID: 22719252) PLoS pathogens
01/01/2012
Role of the Group B antigen of Streptococcus agalactiae: a peptidoglycan-anchored polysaccharide involved in cell wall biogenesis. (PubMedID: 22719253) PLoS pathogens
01/01/2012
The YfiBNR signal transduction mechanism reveals novel targets for the evolution of persistent Pseudomonas aeruginosa in cystic fibrosis airways. (PubMedID: 22719254) PLoS pathogens
01/01/2012
Conditional Stat1 ablation reveals the importance of interferon signaling for immunity to Listeria monocytogenes infection. (PubMedID: 22719255) PLoS pathogens
01/01/2012
The interdomain linker of AAV-2 Rep68 is an integral part of its oligomerization domain: role of a conserved SF3 helicase residue in oligomerization. (PubMedID: 22719256) PLoS pathogens
01/01/2012
Tomato TFT1 is required for PAMP-triggered immunity and mutations that prevent T3S effector XopN from binding to TFT1 attenuate Xanthomonas virulence. (PubMedID: 22719257) PLoS pathogens
01/01/2012
Opposing regulation of PROX1 by interleukin-3 receptor and NOTCH directs differential host cell fate reprogramming by Kaposi sarcoma herpes virus. (PubMedID: 22719258) PLoS pathogens
01/01/2012
Evidence for induction of integron-based antibiotic resistance by the SOS response in a clinical setting. (PubMedID: 22719259) PLoS pathogens
01/01/2012
Malassezia fungi are specialized to live on skin and associated with dandruff, eczema, and other skin diseases. (PubMedID: 22737067) PLoS pathogens
01/01/2012
Human breast milk and antiretrovirals dramatically reduce oral HIV-1 transmission in BLT humanized mice. (PubMedID: 22737068) PLoS pathogens
01/01/2012
Structural and functional insights into the malaria parasite moving junction complex. (PubMedID: 22737069) PLoS pathogens
01/01/2012
Polyfunctional type-1, -2, and -17 CD8? T cell responses to apoptotic self-antigens correlate with the chronic evolution of hepatitis C virus infection. (PubMedID: 22737070) PLoS pathogens
01/01/2012
The link between morphotype transition and virulence in Cryptococcus neoformans. (PubMedID: 22737071) PLoS pathogens
01/01/2012
Linking the transcriptional profiles and the physiological states of Mycobacterium tuberculosis during an extended intracellular infection. (PubMedID: 22737072) PLoS pathogens
01/01/2012
A highly intensified ART regimen induces long-term viral suppression and restriction of the viral reservoir in a simian AIDS model. (PubMedID: 22737073) PLoS pathogens
01/01/2012
Multilocus sequence typing as a replacement for serotyping in Salmonella enterica. (PubMedID: 22737074) PLoS pathogens
01/01/2012
Highly efficient prion transmission by blood transfusion. (PubMedID: 22737075) PLoS pathogens
01/01/2012
Molecular inferences suggest multiple host shifts of rabies viruses from bats to mesocarnivores in Arizona during 2001-2009. (PubMedID: 22737076) PLoS pathogens
01/01/2012
How do viruses interact with stress-associated RNA granules? (PubMedID: 22761570) PLoS pathogens
01/01/2012
The calcitonin receptor gene is a candidate for regulation of susceptibility to herpes simplex type 1 neuronal infection leading to encephalitis in rat. (PubMedID: 22761571) PLoS pathogens
01/01/2012
Large scale genotype comparison of human papillomavirus E2-host interaction networks provides new insights for e2 molecular functions. (PubMedID: 22761572) PLoS pathogens
01/01/2012
Broad spectrum pro-quorum-sensing molecules as inhibitors of virulence in vibrios. (PubMedID: 22761573) PLoS pathogens
01/01/2012
GogB is an anti-inflammatory effector that limits tissue damage during Salmonella infection through interaction with human FBXO22 and Skp1. (PubMedID: 22761574) PLoS pathogens
01/01/2012
Candida albicans scavenges host zinc via Pra1 during endothelial invasion. (PubMedID: 22761575) PLoS pathogens
01/01/2012
Dengue virus targets the adaptor protein MITA to subvert host innate immunity. (PubMedID: 22761576) PLoS pathogens
01/01/2012
The rhoptry proteins ROP18 and ROP5 mediate Toxoplasma gondii evasion of the murine, but not the human, interferon-gamma response. (PubMedID: 22761577) PLoS pathogens
01/01/2012
An endogenous foamy-like viral element in the coelacanth genome. (PubMedID: 22761578) PLoS pathogens
01/01/2012
Lipid body-phagosome interaction in macrophages during infectious diseases: host defense or pathogen survival strategy? (PubMedID: 22792061) PLoS pathogens
01/01/2012
Proteomic profiling of the TRAF3 interactome network reveals a new role for the ER-to-Golgi transport compartments in innate immunity. (PubMedID: 22792062) PLoS pathogens
01/01/2012
Polydnaviruses as symbionts and gene delivery systems. (PubMedID: 22792063) PLoS pathogens
01/01/2012
Antiviral activity of a small molecule deubiquitinase inhibitor occurs via induction of the unfolded protein response. (PubMedID: 22792064) PLoS pathogens
01/01/2012
The cholesterol-dependent cytolysin signature motif: a critical element in the allosteric pathway that couples membrane binding to pore assembly. (PubMedID: 22792065) PLoS pathogens
01/01/2012
Proteasome-dependent disruption of the E3 ubiquitin ligase anaphase-promoting complex by HCMV protein pUL21a. (PubMedID: 22792066) PLoS pathogens
01/01/2012
The lectin pathway of complement activation is a critical component of the innate immune response to pneumococcal infection. (PubMedID: 22792067) PLoS pathogens
01/01/2012
Effect of biodiversity changes in disease risk: exploring disease emergence in a plant-virus system. (PubMedID: 22792068) PLoS pathogens
01/01/2012
EGL-9 controls C. elegans host defense specificity through prolyl hydroxylation-dependent and -independent HIF-1 pathways. (PubMedID: 22792069) PLoS pathogens
01/01/2012
Membrane damage during Listeria monocytogenes infection triggers a caspase-7 dependent cytoprotective response. (PubMedID: 22807671) PLoS pathogens
01/01/2012
Identifying host factors that regulate viral infection. (PubMedID: 22807672) PLoS pathogens
01/01/2012
Gastrointestinal cell mediated immunity and the microsporidia. (PubMedID: 22807673) PLoS pathogens
01/01/2012
Structural basis for the ABO blood-group dependence of Plasmodium falciparum rosetting. (PubMedID: 22807674) PLoS pathogens
01/01/2012
Control of virulence by small RNAs in Streptococcus pneumoniae. (PubMedID: 22807675) PLoS pathogens
01/01/2012
Hyperthermia stimulates HIV-1 replication. (PubMedID: 22807676) PLoS pathogens
01/01/2012
Heme uptake by Leishmania amazonensis is mediated by the transmembrane protein LHR1. (PubMedID: 22807677) PLoS pathogens
01/01/2012
Structural mechanism of trimeric HIV-1 envelope glycoprotein activation. (PubMedID: 22807678) PLoS pathogens
01/01/2012
The receptor Slamf1 on the surface of myeloid lineage cells controls susceptibility to infection by Trypanosoma cruzi. (PubMedID: 22807679) PLoS pathogens
01/01/2012
Endogenous origins of HIV-1 G-to-A hypermutation and restriction in the nonpermissive T cell line CEM2n. (PubMedID: 22807680) PLoS pathogens
01/01/2012
HLA-Cw*0102-restricted HIV-1 p24 epitope variants can modulate the binding of the inhibitory KIR2DL2 receptor and primary NK cell function. (PubMedID: 22807681) PLoS pathogens
01/01/2012
HPV 5 and 8 E6 abrogate ATR activity resulting in increased persistence of UVB induced DNA damage. (PubMedID: 22807682) PLoS pathogens
01/01/2012
Tc17 cells mediate vaccine immunity against lethal fungal pneumonia in immune deficient hosts lacking CD4+ T cells. (PubMedID: 22829762) PLoS pathogens
01/01/2012
Fungal disease and the developing story of bat white-nose syndrome. (PubMedID: 22829763) PLoS pathogens
01/01/2012
Pathogenicity and transmissibility of North American triple reassortant swine influenza A viruses in ferrets. (PubMedID: 22829764) PLoS pathogens
01/01/2012
Evidence for antigenic seniority in influenza A (H3N2) antibody responses in southern China. (PubMedID: 22829765) PLoS pathogens
01/01/2012
A cytotoxic type III secretion effector of Vibrio parahaemolyticus targets vacuolar H+-ATPase subunit c and ruptures host cell lysosomes. (PubMedID: 22829766) PLoS pathogens
01/01/2012
Structure-guided alterations of the gp41-directed HIV-1 broadly neutralizing antibody 2F5 reveal new properties regarding its neutralizing function. (PubMedID: 22829767) PLoS pathogens
01/01/2012
The pore-forming toxin ß hemolysin/cytolysin triggers p38 MAPK-dependent IL-10 production in macrophages and inhibits innate immunity. (PubMedID: 22829768) PLoS pathogens
01/01/2012
Monocytes regulate the mechanism of T-cell death by inducing Fas-mediated apoptosis during bacterial infection. (PubMedID: 22829769) PLoS pathogens
01/01/2012
Mgat1-dependent N-glycosylation of membrane components primes Drosophila melanogaster blood cells for the cellular encapsulation response. (PubMedID: 22829770) PLoS pathogens
01/01/2012
Phagocyte responses to protozoan infection and how Toxoplasma gondii meets the challenge. (PubMedID: 22876173) PLoS pathogens
01/01/2012
Routine use of microbial whole genome sequencing in diagnostic and public health microbiology. (PubMedID: 22876174) PLoS pathogens
01/01/2012
Identification of MrtAB, an ABC transporter specifically required for Yersinia pseudotuberculosis to colonize the mesenteric lymph nodes. (PubMedID: 22876175) PLoS pathogens
01/01/2012
Structural and biochemical basis for development of influenza virus inhibitors targeting the PA endonuclease. (PubMedID: 22876176) PLoS pathogens
01/01/2012
Regulation of Mycobacterium tuberculosis-dependent HIV-1 transcription reveals a new role for NFAT5 in the toll-like receptor pathway. (PubMedID: 22496647) PLoS pathogens
01/01/2012
Human nasal challenge with Streptococcus pneumoniae is immunising in the absence of carriage. (PubMedID: 22496648) PLoS pathogens
01/01/2012
The exopolysaccharide matrix modulates the interaction between 3D architecture and virulence of a mixed-species oral biofilm. (PubMedID: 22496649) PLoS pathogens
01/01/2012
Group A Streptococcus secreted esterase hydrolyzes platelet-activating factor to impede neutrophil recruitment and facilitate innate immune evasion. (PubMedID: 22496650) PLoS pathogens
01/01/2012
ß-Microseminoprotein endows post coital seminal plasma with potent candidacidal activity by a calcium- and pH-dependent mechanism. (PubMedID: 22496651) PLoS pathogens
01/01/2012
Methicillin resistance alters the biofilm phenotype and attenuates virulence in Staphylococcus aureus device-associated infections. (PubMedID: 22496652) PLoS pathogens
01/01/2012
Small-molecule inhibitors of dengue-virus entry. (PubMedID: 22496653) PLoS pathogens
01/01/2012
Virion assembly factories in the nucleus of polyomavirus-infected cells. (PubMedID: 22496654) PLoS pathogens
01/01/2012
Cell-cell transmission enables HIV-1 to evade inhibition by potent CD4bs directed antibodies. (PubMedID: 22496655) PLoS pathogens
01/01/2012
Leishmania induces survival, proliferation and elevated cellular dNTP levels in human monocytes promoting acceleration of HIV co-infection. (PubMedID: 22496656) PLoS pathogens
01/01/2012
Structural basis of cytotoxicity mediated by the type III secretion toxin ExoU from Pseudomonas aeruginosa. (PubMedID: 22496657) PLoS pathogens
01/01/2012
Airborne signals from a wounded leaf facilitate viral spreading and induce antibacterial resistance in neighboring plants. (PubMedID: 22496658) PLoS pathogens
01/01/2012
Matrix metalloprotease 9 mediates neutrophil migration into the airways in response to influenza virus-induced toll-like receptor signaling. (PubMedID: 22496659) PLoS pathogens
01/01/2012
2'-O methylation of internal adenosine by flavivirus NS5 methyltransferase. (PubMedID: 22496660) PLoS pathogens
01/01/2012
Sequential delivery of host-induced virulence effectors by appressoria and intracellular hyphae of the phytopathogen Colletotrichum higginsianum. (PubMedID: 22496661) PLoS pathogens
01/01/2012
The baculovirus uses a captured host phosphatase to induce enhanced locomotory activity in host caterpillars. (PubMedID: 22496662) PLoS pathogens
01/01/2012
The role of cofactors in prion propagation and infectivity. (PubMedID: 22511864) PLoS pathogens
01/01/2012
The problem of auto-correlation in parasitology. (PubMedID: 22511865) PLoS pathogens
01/01/2012
Structural basis for type VI secretion effector recognition by a cognate immunity protein. (PubMedID: 22511866) PLoS pathogens
01/01/2012
Necrotrophism is a quorum-sensing-regulated lifestyle in Bacillus thuringiensis. (PubMedID: 22511867) PLoS pathogens
01/01/2012
Treatment with IL-7 prevents the decline of circulating CD4+ T cells during the acute phase of SIV infection in rhesus macaques. (PubMedID: 22511868) PLoS pathogens
01/01/2012
Interaction of the trans-frame potyvirus protein P3N-PIPO with host protein PCaP1 facilitates potyvirus movement. (PubMedID: 22511869) PLoS pathogens
01/01/2012
TLR4 and NKT cell synergy in immunotherapy against visceral leishmaniasis. (PubMedID: 22511870) PLoS pathogens
01/01/2012
Intraspecies variation in the emergence of hyperinfectious bacterial strains in nature. (PubMedID: 22511871) PLoS pathogens
01/01/2012
The transcription factor AmrZ utilizes multiple DNA binding modes to recognize activator and repressor sequences of Pseudomonas aeruginosa virulence genes. (PubMedID: 22511872) PLoS pathogens
01/01/2012
In vivo suppression of HIV by antigen specific T cells derived from engineered hematopoietic stem cells. (PubMedID: 22511873) PLoS pathogens
01/01/2012
Neutralization serotyping of BK polyomavirus infection in kidney transplant recipients. (PubMedID: 22511874) PLoS pathogens
01/01/2012
Human monoclonal antibodies to a novel cluster of conformational epitopes on HCV E2 with resistance to neutralization escape in a genotype 2a isolate. (PubMedID: 22511875) PLoS pathogens
01/01/2012
Systematic review of mucosal immunity induced by oral and inactivated poliovirus vaccines against virus shedding following oral poliovirus challenge. (PubMedID: 22532797) PLoS pathogens
01/01/2012
The arbuscular mycorrhizal symbiosis: origin and evolution of a beneficial plant infection. (PubMedID: 22532798) PLoS pathogens
01/01/2012
CD8+ T-cells expressing interferon gamma or perforin play antagonistic roles in heart injury in experimental Trypanosoma cruzi-elicited cardiomyopathy. (PubMedID: 22532799) PLoS pathogens
01/01/2012
Modelling the evolutionary dynamics of viruses within their hosts: a case study using high-throughput sequencing. (PubMedID: 22532800) PLoS pathogens
01/01/2012
AMP-activated kinase restricts Rift Valley fever virus infection by inhibiting fatty acid synthesis. (PubMedID: 22532801) PLoS pathogens